Welcome to our GitHub page. We are a research group at Aarhus University, part of the Department of Clinical Medicine and the Department of Pathology.
Our research focus is the study of complex tissues using advanced imaging techniques and machine learning and AI techniques.
Feature-rich Python implementation of the tximport package for gene count estimation.
A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.
Python 2
Snakemake workflow for bulk RNA sequencing with pytximport.
Python 1
Forked from Manciukic/xpysom
XPySom is a minimalistic implementation of batch Self Organizing Map algorithm
Python
Forked from bioconda/bioconda-recipes
Conda recipes for the bioconda channel.
Shell
Feature-rich Python implementation of the tximport package for gene count estimation.
Conda recipes for the bioconda channel.
A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
XPySom is a minimalistic implementation of batch Self Organizing Map algorithm
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