Release 0.73

This release adds initial support for calculating lyapunov exponents and can be used like:

        >>> load_example('brusselator')
        >>> exponents, sums, divergence = run_lyapunov(num_exponents=2)
        >>> print(exponents)
        [-0.0007025645113957691, -2.6051942604518477]

Release 0.72

This release adds a set_parameters function the basico PetabSimulator, with that it will be possible to reevaluate many parameters without requiring a reload.

Release 0.71

This release adds support for the new output specifications for scan tasks to get_scan_settings and set_scan_settings. That way more precise control can be gained as to when output is selected.

Release 0.70

This release fixes an issue (#56 ) where mapping a number to a reaction parameter would only work if that parameter was in the first position. Additionally, time course settings are now restored when retrieving simulation results for experiments, issue (#54).

Release 0.69

This release fixes an issue where notes / annotations could not be set on all elements. This fixes #53 .

Release 0.68

This release fixes an issue that corrupted expressions when replacing CNs with display names. #52

Release 0.67

This release fixes an issue if NaNs are in the list of affected experiments.

Release 0.66

This release fixes an issue, where the compartment dimensions could not be set with a numpy integer. #49 .

Release 0.65

This release fixes issues #45 and #46, where it was not possible to add experiments for model elements that were added (until the experiment was saved). Now the model is compiled before adding experiments solving that issue. Additionally get_simulation_results disables randomize_start_values when calculating the solution statistic.

Finally several changes were made to make basico compatible with upcoming breaking API changes in the COPASI backend.

Release 0.64

This release fixes an issue when expression contained logical || or && or used e-notation.