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snakemake-run

snakemake-run #386

Triggered via schedule January 3, 2025 09:06
Status Failure
Total duration 28m 16s
Artifacts 1

snakemake-run.yaml

on: schedule
Matrix: run snakemake
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2 errors and 7 warnings
run snakemake (macos-13)
No such keg: /usr/local/Cellar/pkg-config@0.29.2
run snakemake (ubuntu-latest)
Process completed with exit code 1.
run snakemake (macos-13)
pkgconf 2.3.0_1 is already installed and up-to-date. To reinstall 2.3.0_1, run: brew reinstall pkgconf
run snakemake (macos-13)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
run snakemake (macos-13)
'nodefaults' channel detected: will remove 'defaults' if added implicitly. In the future, 'nodefaults' as a way of removing 'defaults' won't be supported. Please set 'conda-remove-defaults' = 'true' to remove this warning.
run snakemake (macos-13)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:200: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
run snakemake (ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
run snakemake (ubuntu-latest)
'nodefaults' channel detected: will remove 'defaults' if added implicitly. In the future, 'nodefaults' as a way of removing 'defaults' won't be supported. Please set 'conda-remove-defaults' = 'true' to remove this warning.
run snakemake (ubuntu-latest)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:200: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(

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all_rout
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