Try with conda instead of mamba

csoneson · Feb 18, 2023 · 76d9631 · 76d9631
1 parent d33a042
commit 76d9631
Showing 1 changed file with 7 additions and 5 deletions.
diff --git a/.github/workflows/snakemake-run.yaml b/.github/workflows/snakemake-run.yaml
@@ -66,15 +66,17 @@ jobs:
       - name: Install snakemake (Linux)
         if: runner.os == 'Linux'
         run: |
-          conda install -c conda-forge mamba=0.23.3
-          rm -f /usr/share/miniconda/pkgs/cache/*.json # workaround from mamba-org/mamba#488
-          mamba install -c bioconda snakemake=6.10.0
+          #conda install -c conda-forge mamba=0.23.3
+          #rm -f /usr/share/miniconda/pkgs/cache/*.json # workaround from mamba-org/mamba#488
+          #mamba install -c bioconda snakemake=6.10.0
+          conda install -c bioconda snakemake=6.10.0
 
       - name: Install snakemake (macOS)
         if: runner.os == 'macOS'
         run: |
-          conda install -c conda-forge mamba=0.23.3
-          mamba install -c bioconda snakemake=6.10.0
+          #conda install -c conda-forge mamba=0.23.3
+          #mamba install -c bioconda snakemake=6.10.0
+          conda install -c bioconda snakemake=6.10.0
       
       - name: Run workflow
         env: