incorrect syntax in ci.yml (#119)

* incorrect syntax in ci.yml

* typo

* ci syntax

* CI does not like comments

* fix lstchain version

* install lstchain via pip

* doble = for lstchain version in pip....

* add codecov to CI

* take out requirements.txt file

.github/workflows/CI.yml

@@ -31,18 +31,22 @@ jobs:
           . $CONDA/etc/profile.d/conda.sh
           conda config --set always_yes yes --set changeps1 no
           sed -i -e "s/- python=.*/- python=$PYTHON_VERSION/g" environment.yml
+
           echo "Creating conda env"
           conda env create -n ci -f environment.yml
           conda activate ci
-#          echo "Installing additional pip packages"
-          # we install ctapipe using pip to be able to select any commit, e.g. the current master
+
+          echo "Installing additional pip packages"
           pip install \
-#            "git+https://github.com/cta-observatory/ctapipe@$CTAPIPE_VERSION" \
             pytest-cov
+
           echo "pip install ."
           pip install .
+
       - name: Tests
         run: |
           source $CONDA/etc/profile.d/conda.sh
           conda activate ci
-          pytest -cov -cov-report=xml lstmcpipe
+          pytest --cov --cov-report=xml lstmcpipe
+
+      - uses: codecov/codecov-action@v1

README.rst

@@ -1,8 +1,10 @@
-lstMCpipe |CI|
+lstMCpipe |CI| |coverage|
 =========================
 
 .. |CI| image:: https://github.com/cta-observatory/lstmcpipe/workflows/CI/badge.svg?branch=master
   :target: https://github.com/cta-observatory/lstmcpipe/actions?query=workflow%3ACI
+.. |coverage| image:: https://codecov.io/gh/cta-observatory/lstmcpipe/branch/master/graph/badge.svg
+  :target: https://codecov.io/gh/cta-observatory/lstmcpipe
 
 Scripts to ease the reduction of MC data on the LST cluster at La Palma.   
 

environment.yml

@@ -8,10 +8,10 @@ dependencies:
   - astropy~=4.2
   - pip
   - ctapipe~=0.10.5
-  - lstchain==0.7.3
   - pip:
 #      - pytest_runner
 #      - pytest-ordering
-      - ctapipe_io_lst~=0.9.2
 #      - ctaplot
+      - ctapipe_io_lst~=0.9.2
+      - lstchain==0.7.3
       - pyirf~=0.4.0