Formatting: Break long lines

ctmrbio · Apr 11, 2024 · a28dd19 · a28dd19
1 parent ef444a8
commit a28dd19
Showing 1 changed file with 8 additions and 3 deletions.
diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -33,13 +33,17 @@ LOGDIR = Path(config["logdir"])
 all_outputs = []
 
 if config["samplesheet"]:
-    samplesheet = SampleSheet(config["samplesheet"], keep_local=config["keep_local"], endpoint_url=config["s3_endpoint_url"])
+    samplesheet = SampleSheet(
+            samplesheet=config["samplesheet"],
+            keep_local=config["keep_local"],
+            endpoint_url=config["s3_endpoint_url"],
+    )
     SAMPLES = samplesheet.samples
     INPUT_read1 = lambda w: samplesheet.sample_info[w.sample]["read1"]
     INPUT_read2 = lambda w: samplesheet.sample_info[w.sample]["read2"]
 else:
     SAMPLES = set(glob_wildcards(INPUTDIR/config["input_fn_pattern"]).sample)
-    INPUT_read1 = INPUTDIR/config["input_fn_pattern"].format(sample="{sample}", readpair="1"),
+    INPUT_read1 = INPUTDIR/config["input_fn_pattern"].format(sample="{sample}", readpair="1")
     INPUT_read2 = INPUTDIR/config["input_fn_pattern"].format(sample="{sample}", readpair="2")
 
 onstart:
@@ -58,7 +62,8 @@ onstart:
         if config["samplesheet"]:
             print(f"Found these samples in '{config['samplesheet']}':\n{SAMPLES}")
         else:
-            print(f"Found these samples in '{config['inputdir']}' using input filename pattern '{config['input_fn_pattern']}':\n{SAMPLES}")
+            print(f"Found these samples in '{config['inputdir']}' using "
+                   "input filename pattern '{config['input_fn_pattern']}':\n{SAMPLES}")
 
 
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