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StaG v0.5.0
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@boulund boulund released this 18 Nov 14:33
· 190 commits to master since this release
v0.5.0
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Learn about vigilant mode.

This StaG release focuses on including recent developments to MetaPhlAn and HUMAnN (which are both now at version 3), and also includes support for StrainPhlAn. Further, this release improves the automated procedures concerning Singularity image creation and distribution by using Github Actions and distributing the images via the Github Container Registry (ghcr.io), which will make developing even more robust StaG versions easier for people involved in the development. Aside from the most recent changes to Singularity image creation and distribution, the majority of the commits in this new release have been in production at CTMR for 8 months.

Notable changes in this release include:

  • Updating to MetaPhlAn3 and HUMAnN3, with StrainPhlAn3 support added
  • New user configureable feature to automatically remove some of the largest most common intermediary files
  • Updating fastp, Kaiju, Kraken2, BBMap and MultiQC to more recent versions
  • General bug fixes and usability improvements

For a detailed list of changes refer to the CHANGELOG.

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