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Offline version of ZeroCostDL4Mic, useful for running headless machine learning in microscopy

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ctr26/dl4mic

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dl4mic

Packaged form of ZeroCostDl4Mic to make the process more platform agnostic. Attempts to bundle reusable code and structure model training and prediction into a no-code config file toolset.

pip install git+https://github.com/ctr26/dl4mic

Currently working with Noise2Void and Care2D

Build and test

This project uses poetry to build, test and manage dependnecies:

Quick start: peotry build poetry install poetry run pytest

Note that testing is (rightly) slow due to running model epochs for testing

Todo:

  • Find all the bugs
  • Implement the full roster of ZeroCostDL4Mic models.
  • Command line interface
  • Implement lazy loading of large/uninstalled packages (looking at you pyTorch)

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Offline version of ZeroCostDL4Mic, useful for running headless machine learning in microscopy

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