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fixes to make new version of cython (3.0+) happy #33

fixes to make new version of cython (3.0+) happy

fixes to make new version of cython (3.0+) happy #33

Workflow file for this run

# Based on Nick Naso's cpp.yml workflow, https://gist.github.com/NickNaso/0d478f1481686d5bcc868cac06620a60
on:
push:
pull_request:
release:
jobs:
build_cpp:
name: ${{ matrix.config.name }}
runs-on: ${{ matrix.config.os }}
strategy:
fail-fast: false
matrix:
config:
- {
name: "Ubuntu_Latest_GCC",
os: ubuntu-latest,
artifact: "ubuntu_gcc.7z",
build_type: "Release",
cc: "gcc",
cxx: "g++",
archiver: "7z a",
}
- {
name: "Ubuntu_GCC_9",
os: ubuntu-latest,
artifact: "ubuntu_gcc9.7z",
build_type: "Release",
cc: "gcc",
cxx: "g++",
archiver: "7z a",
}
- {
name: "macOS Latest Clang",
os: macos-latest,
artifact: "macos_clang.7z",
build_type: "Release",
cc: "clang",
cxx: "clang++",
archiver: "7za a",
}
build_scalapack: [True, False]
steps:
- uses: actions/checkout@v2
- name: Print env
run: |
echo github.event.action: ${{ github.event.action }}
echo github.event_name: ${{ github.event_name }}
echo matrix.config.build_scalapack
echo ${{ matrix.config.build_scalapack }}
- name: Install dependencies on ubuntu
if: startsWith(matrix.config.name, 'Ubuntu')
run: |
sudo apt-get update;
sudo apt install -y g++ gfortran git make libblas-dev liblapack-dev mpich
- name: Install dependencies on macos
if: startsWith(matrix.config.os, 'macos')
run: |
brew install gcc mpich
- name: Configure Cyclops and Build Scalapack
if: matrix.config.build_scalapack
shell: bash
run:
./configure CXXFLAGS="-O0" --build-scalapack
- name: Configure Cyclops without Scalapack
if: ( ! matrix.config.build_scalapack )
shell: bash
run:
./configure CXXFLAGS="-O0"
- name: Build Cyclops
shell: bash
run:
make -j4
- name: Build Tests and Test Cyclops C++
run:
make test
- name: Test Cyclops C++ with 2 MPI processes
if: startsWith(matrix.config.name, 'Ubuntu')
shell: bash
run:
export OMP_NUM_THREADS=1;
export MPIR_CVAR_DEVICE_COLLECTIVES=none;
make test2
- name: Build Python Install dependencies on ubuntu
if: startsWith(matrix.config.name, 'Ubuntu')
run: |
sudo apt install -y python3-dev virtualenv;
mkdir envs
- name: Build Python Install dependencies on macos
if: startsWith(matrix.config.os, 'macos')
run: |
brew install virtualenv
- name: Create Python virtual environment and install dependencies via pip
run: |
virtualenv -p python3 ./envs/py3env;
source ./envs/py3env/bin/activate;
pip install numpy cython
- name: Build Python library
run:
source ./envs/py3env/bin/activate;
make python
- name: Test Cyclops Python
run:
source ./envs/py3env/bin/activate;
make python_test
- name: Test Cyclops Python with 2 MPI processes
if: startsWith(matrix.config.name, 'Ubuntu')
shell: bash
run:
source ./envs/py3env/bin/activate;
export OMP_NUM_THREADS=1;
export MPIR_CVAR_DEVICE_COLLECTIVES=none;
make python_test2