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HistomicsTK Flywheel gear for generating pathomic features

This gear will generate pathomic features for an H&E image using HistomicsTK tools.

HistomicsTK source documentation

Dependencies:

  • HistomicsTK (gear uses the latest Docker container at dsarchive/histomicstk)

Required inputs:

  • H&E image
  • nuclei segmentation image (binary or labeled; currently does not handle grayscale masks)