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manifest.json
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manifest.json
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{
"name": "histomicstk-feature-extraction",
"label": "Feature extraction (H&E)",
"description": "This tool can be used to generate pathomic features for an H&E pathology image.",
"author": "D3b-TIRU",
"maintainer": "D3b-TIRU <flywheel@d3b.center>",
"url": "https://github.com/DigitalSlideArchive/HistomicsTK",
"source": "https://github.com/d3b-center/fw-histomicstk-feature-extraction/tree/main",
"version": "0.0.4",
"license": "Apache-2.0",
"custom": {
"flywheel": {
"suite": "HistomicsTK"
},
"gear-builder": {
"category": "analysis",
"image": "chop.flywheel.io/histomicstk-feature-extraction:0.0.4"
}
},
"inputs": {
"input_image": {
"base": "file",
"description": "H&E image."
},
"label_image": {
"base": "file",
"description": "Nuclei segmentation image (binary or labeled)."
},
"api-key": {
"base": "api-key",
"read-only": true
}
},
"config": {
"debug": {
"default": false,
"description": "Log debug messages",
"type": "boolean"
}
},
"environment": {
"PATH": "/opt/poetry/bin:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",
"PYTHON_VERSION": "3.9.7",
"PIP_NO_CACHE_DIR": "0",
"POETRY_HOME": "/opt/poetry",
"POETRY_VERSION": "1.1.11",
"POETRY_VIRTUALENVS_CREATE": "false",
"FLYWHEEL": "/flywheel/v0"
},
"command": "python run.py"
}