Pass $USER to tox envs #1201
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Pass $USER to tox envs #1201
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Codecov ReportBase: 89.16% // Head: 89.16% // No change to project coverage 👍
Additional details and impacted files@@ Coverage Diff @@
## master #1201 +/- ##
=======================================
Coverage 89.16% 89.16%
=======================================
Files 76 76
Lines 9471 9471
=======================================
Hits 8445 8445
Misses 1026 1026
Flags with carried forward coverage won't be shown. Click here to find out more. Help us with your feedback. Take ten seconds to tell us how you rate us. Have a feature suggestion? Share it here. ☔ View full report at Codecov. |
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The tests are failing because of a cert error with ontobee.org. |
eh - tests fail avalanche due to expired certificates of ontobee.org2023-02-03T15:12:47.1234955Z /opt/hostedtoolcache/Python/3.9.16/x64/lib/python3.9/site-packages/urllib3/util/retry.py:592: in increment
2023-02-03T15:12:47.1235497Z raise MaxRetryError(_pool, url, error or ResponseError(cause))
2023-02-03T15:12:47.1236757Z E urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='ontobee.org', port=443): Max retries exceeded with url: /browser/rdf.php?o=NCBITaxon&iri=http://purl.obolibrary.org/obo/NCBITaxon_1234175 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1129)')))
2023-02-03T15:12:47.1237493Z ❯ wget -S -O- http://purl.obolibrary.org/obo/NCBITaxon_28584
--2023-02-03 11:03:23-- http://purl.obolibrary.org/obo/NCBITaxon_28584
Resolving purl.obolibrary.org (purl.obolibrary.org)... 3.223.180.112
Connecting to purl.obolibrary.org (purl.obolibrary.org)|3.223.180.112|:80... connected.
HTTP request sent, awaiting response...
HTTP/1.1 303 See Other
Date: Fri, 03 Feb 2023 16:03:23 GMT
Server: Apache/2.4.41 (Ubuntu)
Location: http://www.ontobee.org/browser/rdf.php?o=NCBITaxon&iri=http://purl.obolibrary.org/obo/NCBITaxon_28584
Content-Length: 397
Keep-Alive: timeout=5, max=100
Connection: Keep-Alive
Content-Type: text/html; charset=iso-8859-1
Location: http://www.ontobee.org/browser/rdf.php?o=NCBITaxon&iri=http://purl.obolibrary.org/obo/NCBITaxon_28584 [following]
--2023-02-03 11:03:23-- http://www.ontobee.org/browser/rdf.php?o=NCBITaxon&iri=http://purl.obolibrary.org/obo/NCBITaxon_28584
Resolving www.ontobee.org (www.ontobee.org)... 141.214.2.48
Connecting to www.ontobee.org (www.ontobee.org)|141.214.2.48|:80... connected.
HTTP request sent, awaiting response...
HTTP/1.1 301 Moved Permanently
Date: Fri, 03 Feb 2023 16:03:23 GMT
Server: Apache/2.4.6 (Red Hat Enterprise Linux) OpenSSL/1.0.2k-fips PHP/7.2.21 mod_wsgi/4.6.5 Python/3.5 mod_perl/2.0.11 Perl/v5.16.3
Location: https://ontobee.org/browser/rdf.php?o=NCBITaxon&iri=http://purl.obolibrary.org/obo/NCBITaxon_28584
Content-Length: 310
Keep-Alive: timeout=5, max=100
Connection: Keep-Alive
Content-Type: text/html; charset=iso-8859-1
Location: https://ontobee.org/browser/rdf.php?o=NCBITaxon&iri=http://purl.obolibrary.org/obo/NCBITaxon_28584 [following]
--2023-02-03 11:03:23-- https://ontobee.org/browser/rdf.php?o=NCBITaxon&iri=http://purl.obolibrary.org/obo/NCBITaxon_28584
Resolving ontobee.org (ontobee.org)... 141.214.2.48
Connecting to ontobee.org (ontobee.org)|141.214.2.48|:443... connected.
ERROR: The certificate of ‘ontobee.org’ is not trusted.
ERROR: The certificate of ‘ontobee.org’ has expired.
The certificate has expiredsubmitted OntoZoo/ontobee#188 to inquire. |
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certificate issue was fixed, restarted failed jobs. |
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all green, let's proceed! |
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🚀 PR was released in |
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Recent versions of Docker and/or Docker Compose require the
$USERenvvar to be set, yet tox unsets this envvar by default. This PR fixes that.