[batch][query] silence warnings in plotly

Plotly relies on behavior that Pandas is deprecating. See plotly/plotly.py#4363 and plotly/plotly.py#4379. The fix (plotly/plotly.py#4379) merged into [main and was released in 5.18.0](plotly/plotly.py@57e4d1d).
danking · Nov 6, 2023 · a61e30d · a61e30d
1 parent a5c7a8a
commit a61e30d
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Showing 6 changed files with 32 additions and 38 deletions.
diff --git a/batch/pinned-requirements.txt b/batch/pinned-requirements.txt
@@ -78,11 +78,11 @@ packaging==23.2
     #   -c hail/batch/../hail/python/dev/pinned-requirements.txt
     #   -c hail/batch/../hail/python/pinned-requirements.txt
     #   plotly
-pandas==2.1.1
+pandas==2.1.2
     # via
     #   -c hail/batch/../hail/python/pinned-requirements.txt
     #   -r hail/batch/requirements.txt
-plotly==5.17.0
+plotly==5.18.0
     # via
     #   -c hail/batch/../hail/python/pinned-requirements.txt
     #   -r hail/batch/requirements.txt

diff --git a/batch/requirements.txt b/batch/requirements.txt
@@ -4,7 +4,7 @@
 -c ../web_common/pinned-requirements.txt
 dictdiffer>=0.8.1,<1
 pandas>=2,<3
-plotly>=5.5.0,<6
+plotly>=5.18.0,<6
 # Worker requirements
 aiodocker>=0.17.0,<1
 aiorwlock>=1.0.0,<2

diff --git a/gear/pinned-requirements.txt b/gear/pinned-requirements.txt
@@ -75,7 +75,7 @@ frozenlist==1.4.0
     #   aiosignal
 google-api-core==2.12.0
     # via google-api-python-client
-google-api-python-client==2.105.0
+google-api-python-client==2.106.0
     # via google-cloud-profiler
 google-auth==2.23.3
     # via
@@ -135,7 +135,7 @@ orjson==3.9.9
     #   -r hail/gear/requirements.txt
 prometheus-async==19.2.0
     # via -r hail/gear/requirements.txt
-prometheus-client==0.17.1
+prometheus-client==0.18.0
     # via
     #   -c hail/gear/../hail/python/dev/pinned-requirements.txt
     #   -r hail/gear/requirements.txt
@@ -223,7 +223,7 @@ urllib3==1.26.18
     #   -c hail/gear/../hail/python/pinned-requirements.txt
     #   kubernetes-asyncio
     #   requests
-wcwidth==0.2.8
+wcwidth==0.2.9
     # via
     #   -c hail/gear/../hail/python/dev/pinned-requirements.txt
     #   prompt-toolkit

diff --git a/hail/python/dev/pinned-requirements.txt b/hail/python/dev/pinned-requirements.txt
@@ -49,8 +49,6 @@ babel==2.13.1
     # via
     #   jupyterlab-server
     #   sphinx
-backcall==0.2.0
-    # via ipython
 beautifulsoup4==4.12.2
     # via nbconvert
 black==22.12.0
@@ -79,7 +77,7 @@ click==8.1.7
     #   aiohttp-devtools
     #   black
     #   curlylint
-comm==0.1.4
+comm==0.2.0
     # via
     #   ipykernel
     #   ipywidgets
@@ -113,13 +111,13 @@ exceptiongroup==1.1.3
     #   pytest
 execnet==2.0.2
     # via pytest-xdist
-executing==2.0.0
+executing==2.0.1
     # via
     #   devtools
     #   stack-data
 fastjsonschema==2.18.1
     # via nbformat
-filelock==3.12.4
+filelock==3.13.1
     # via virtualenv
 fqdn==1.5.1
     # via jsonschema
@@ -130,7 +128,7 @@ frozenlist==1.4.0
     #   aiosignal
 fswatch==0.1.1
     # via -r hail/hail/python/dev/requirements.txt
-identify==2.5.30
+identify==2.5.31
     # via pre-commit
 idna==3.4
     # via
@@ -157,13 +155,11 @@ ipykernel==6.26.0
     #   jupyter-console
     #   jupyterlab
     #   qtconsole
-ipython==8.16.1
+ipython==8.17.2
     # via
     #   ipykernel
     #   ipywidgets
     #   jupyter-console
-ipython-genutils==0.2.0
-    # via qtconsole
 ipywidgets==8.1.1
     # via jupyter
 isoduration==20.11.0
@@ -185,7 +181,7 @@ json5==0.9.14
     # via jupyterlab-server
 jsonpointer==2.4
     # via jsonschema
-jsonschema[format-nongpl]==4.19.1
+jsonschema[format-nongpl]==4.19.2
     # via
     #   jupyter-events
     #   jupyterlab-server
@@ -194,7 +190,7 @@ jsonschema-specifications==2023.7.1
     # via jsonschema
 jupyter==1.0.0
     # via -r hail/hail/python/dev/requirements.txt
-jupyter-client==8.5.0
+jupyter-client==8.6.0
     # via
     #   ipykernel
     #   jupyter-console
@@ -203,7 +199,7 @@ jupyter-client==8.5.0
     #   qtconsole
 jupyter-console==6.6.3
     # via jupyter
-jupyter-core==5.4.0
+jupyter-core==5.5.0
     # via
     #   ipykernel
     #   jupyter-client
@@ -214,11 +210,11 @@ jupyter-core==5.4.0
     #   nbconvert
     #   nbformat
     #   qtconsole
-jupyter-events==0.8.0
+jupyter-events==0.9.0
     # via jupyter-server
 jupyter-lsp==2.2.0
     # via jupyterlab
-jupyter-server==2.9.1
+jupyter-server==2.10.0
     # via
     #   jupyter-lsp
     #   jupyterlab
@@ -227,7 +223,7 @@ jupyter-server==2.9.1
     #   notebook-shim
 jupyter-server-terminals==0.4.4
     # via jupyter-server
-jupyterlab==4.0.7
+jupyterlab==4.0.8
     # via notebook
 jupyterlab-pygments==0.2.2
     # via nbconvert
@@ -261,7 +257,7 @@ mypy-extensions==1.0.0
     # via black
 nbclient==0.8.0
     # via nbconvert
-nbconvert==7.9.2
+nbconvert==7.11.0
     # via
     #   jupyter
     #   jupyter-server
@@ -314,8 +310,6 @@ pathspec==0.11.2
     #   curlylint
 pexpect==4.8.0
     # via ipython
-pickleshare==0.7.5
-    # via ipython
 pillow==10.1.0
     # via
     #   -c hail/hail/python/dev/../pinned-requirements.txt
@@ -330,7 +324,7 @@ pluggy==1.3.0
     # via pytest
 pre-commit==3.5.0
     # via -r hail/hail/python/dev/requirements.txt
-prometheus-client==0.17.1
+prometheus-client==0.18.0
     # via jupyter-server
 prompt-toolkit==3.0.39
     # via
@@ -362,7 +356,7 @@ pygments==2.16.1
     #   sphinx
 pylint==2.17.7
     # via -r hail/hail/python/dev/requirements.txt
-pyright==1.1.333
+pyright==1.1.334
     # via -r hail/hail/python/dev/requirements.txt
 pytest==7.4.3
     # via
@@ -411,7 +405,7 @@ pyzmq==25.1.1
     #   jupyter-console
     #   jupyter-server
     #   qtconsole
-qtconsole==5.4.4
+qtconsole==5.5.0
     # via jupyter
 qtpy==2.4.1
     # via qtconsole
@@ -433,11 +427,11 @@ rfc3986-validator==0.1.1
     # via
     #   jsonschema
     #   jupyter-events
-rpds-py==0.10.6
+rpds-py==0.12.0
     # via
     #   jsonschema
     #   referencing
-ruff==0.1.2
+ruff==0.1.4
     # via -r hail/hail/python/dev/requirements.txt
 send2trash==1.8.2
     # via jupyter-server
@@ -503,7 +497,7 @@ tomli==2.0.1
     #   jupyterlab
     #   pylint
     #   pytest
-tomlkit==0.12.1
+tomlkit==0.12.2
     # via pylint
 tornado==6.3.3
     # via
@@ -514,7 +508,7 @@ tornado==6.3.3
     #   jupyterlab
     #   notebook
     #   terminado
-traitlets==5.12.0
+traitlets==5.13.0
     # via
     #   comm
     #   ipykernel
@@ -576,7 +570,7 @@ virtualenv==20.24.6
     # via pre-commit
 watchfiles==0.21.0
     # via aiohttp-devtools
-wcwidth==0.2.8
+wcwidth==0.2.9
     # via prompt-toolkit
 webcolors==1.13
     # via jsonschema
@@ -586,7 +580,7 @@ webencodings==0.5.1
     #   tinycss2
 websocket-client==1.6.4
     # via jupyter-server
-wheel==0.41.2
+wheel==0.41.3
     # via -r hail/hail/python/dev/requirements.txt
 widgetsnbextension==4.0.9
     # via ipywidgets

diff --git a/hail/python/pinned-requirements.txt b/hail/python/pinned-requirements.txt
@@ -94,7 +94,7 @@ commonmark==0.9.1
     # via
     #   -c hail/hail/python/hailtop/pinned-requirements.txt
     #   rich
-contourpy==1.1.1
+contourpy==1.2.0
     # via bokeh
 cryptography==41.0.5
     # via
@@ -199,15 +199,15 @@ packaging==23.2
     # via
     #   bokeh
     #   plotly
-pandas==2.1.1
+pandas==2.1.2
     # via
     #   -r hail/hail/python/requirements.txt
     #   bokeh
 parsimonious==0.10.0
     # via -r hail/hail/python/requirements.txt
 pillow==10.1.0
     # via bokeh
-plotly==5.17.0
+plotly==5.18.0
     # via -r hail/hail/python/requirements.txt
 portalocker==2.8.2
     # via
@@ -335,7 +335,7 @@ uvloop==0.19.0 ; sys_platform != "win32"
     #   -r hail/hail/python/hailtop/requirements.txt
 wrapt==1.15.0
     # via deprecated
-xyzservices==2023.10.0
+xyzservices==2023.10.1
     # via bokeh
 yarl==1.9.2
     # via

diff --git a/hail/python/requirements.txt b/hail/python/requirements.txt
@@ -10,7 +10,7 @@ frozenlist>=1.3.1,<2
 numpy<2
 pandas>=2,<3
 parsimonious<1
-plotly>=5.5.0,<6
+plotly>=5.18.0,<6
 protobuf==3.20.2
 pyspark>=3.3.0,<3.4
 requests>=2.25.1,<3