py-bakta: new package

var/spack/repos/builtin/packages/py-bakta/package.py

@@ -0,0 +1,36 @@
+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+
+from spack.package import *
+
+
+class PyBakta(PythonPackage):
+    """Bakta: rapid & standardized annotation
+    of bacterial genomes, MAGs & plasmids"""
+
+    homepage = "https://github.com/oschwengers/bakta"
+    pypi = "bakta/bakta-1.5.1.tar.gz"
+
+    maintainers = ['oschwengers']
+
+    version("1.5.1", sha256="36781612c4eaa99e6e24a00e8ab5b27dadf21c98ae6d16432f3e78c96a4adb5d")
+
+    depends_on("python@3.8:", type=("build", "run"))
+    depends_on("py-setuptools", type=("build", "run"))
+    depends_on("py-biopython@1.78:", type=("build", "run"))
+    depends_on("py-xopen@1.1.0:", type=("build", "run"))
+    depends_on("py-requests@2.25.1:", type=("build", "run"))
+    depends_on("py-alive-progress@1.6.2", type=("build", "run"))
+    depends_on("trnascan-se@2.0.8:", type=("build", "run"))
+    depends_on("aragorn@1.2.38:", type=("build", "run"))
+    depends_on("infernal@1.1.4:", type=("build", "run"))
+    depends_on("pilercr", type=("build", "run"))
+    depends_on("prodigal@2.6.3:", type=("build", "run"))
+    depends_on("hmmer@3.3.2:", type=("build", "run"))
+    depends_on("diamond@2.0.14:", type=("build", "run"))
+    depends_on("blast-plus@2.12.0:", type=("build", "run"))
+    depends_on("amrfinder@3.10.23:", type=("build", "run"))
+    depends_on("py-deepsig-biocomp@1.2.5:", type=("build", "run"))