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Cosigt

Cosigt (COsine SImilarity-based GenoTyper) is a small tool and a snakemake pipeline capable to assign structural haplotypes (that is, genotype) to sequenced samples using pangenome graphs. An initial explanation of the rationale behind cosigt is detailed in this manuscript here.

Note

We are currently finalising the pipeline and the documentation and we hope to release it with the community soon!