Progress timing is out of order

[holmrenser]

Progress is not reported in order:

Analysing Orthogroups
=====================
2021-05-05 19:54:58 : Starting MSA/Trees
Species tree: Using 2090 orthogroups with minimum of 16.0% of species having single-copy genes in any orthogroup

Inferring multiple sequence alignments for species tree
-------------------------------------------------------
2021-05-05 20:30:54 : Done 1000 of 2090
2021-05-05 20:09:14 : Done 0 of 2090
2021-05-05 20:43:53 : Done 2000 of 2090

Inferring remaining multiple sequence alignments and gene trees
---------------------------------------------------------------
2021-05-06 04:58:55 : Done 9000 of 61750
2021-05-06 07:36:11 : Done 20000 of 61750
2021-05-06 03:41:23 : Done 4000 of 61750
2021-05-06 08:38:44 : Done 24000 of 61750
2021-05-06 01:43:02 : Done 1000 of 61750
2021-05-06 07:08:31 : Done 18000 of 61750
2021-05-06 04:15:40 : Done 6000 of 61750
2021-05-06 05:37:10 : Done 12000 of 61750
2021-05-06 08:59:16 : Done 25000 of 61750
2021-05-06 07:22:06 : Done 19000 of 61750
2021-05-06 05:12:28 : Done 10000 of 61750
2021-05-06 09:59:58 : Done 28000 of 61750
2021-05-06 03:14:40 : Done 3000 of 61750
2021-05-06 07:51:35 : Done 21000 of 61750
2021-05-06 08:07:24 : Done 22000 of 61750
2021-05-05 20:45:01 : Done 0 of 61750
2021-05-06 04:00:16 : Done 5000 of 61750
2021-05-06 05:51:02 : Done 13000 of 61750
2021-05-06 09:39:07 : Done 27000 of 61750
2021-05-06 06:55:51 : Done 17000 of 61750
2021-05-06 04:44:13 : Done 8000 of 61750
2021-05-06 09:21:45 : Done 26000 of 61750
2021-05-06 02:39:50 : Done 2000 of 61750
2021-05-06 10:26:10 : Done 29000 of 61750
2021-05-06 08:23:57 : Done 23000 of 61750
2021-05-06 05:24:53 : Done 11000 of 61750
2021-05-06 06:22:52 : Done 15000 of 61750
2021-05-06 04:30:23 : Done 7000 of 61750
2021-05-06 06:05:33 : Done 14000 of 61750

[davidemms]

Hi

Thanks for reporting this, I think flushing stdout when reporting progress in parallel threads will resolve this issue. I'm submitting that fix now.

Best wishes
David