OrthoFinder v1.0.0-beta

New, automated inference of:

• gene trees for all orthogroups
• rooted species tree
• orthologues

This is a beta release, if you are not interested in any of the new functionality you should download the previous non-beta version. There are extra dependencies need to perform the new analyses, please see README file: https://github.com/davidemms/OrthoFinder

OrthoFinder v0.7.1

New, automated orthogroup statistics:

• Overall statistics on number of genes assigned to orthogroups, number of orthogroups, G50, orthogroup size etc.
• Species-level statistics
• Pair-wise species statistics

OrthoFinder v0.6.1

• Provided standalone binaries

OrthoFinder v0.6

• Improved parallel workload balancing for BLAST searches
• Parallelised remainder of the OrthoFinder algorithm
• Added a suite of regression tests

README: https://github.com/davidemms/OrthoFinder

OrthoFinder v0.4

• Infer orthogroups from a set of proteomes with a single command.
• Generate alignments and trees for each orthogroup.
• Add and removed species from existing analyses.

README: https://github.com/davidemms/OrthoFinder