ENA_SARS_Cov2_nanopore

Pipeline for mapping SARS-CoV2 nanopore reads using nextflow

Name		Name	Last commit message	Last commit date
Latest commit History 279 Commits
archived		archived
bin		bin
nextflow-lib		nextflow-lib
results		results
Dockerfile		Dockerfile
LICENSE		LICENSE
README.md		README.md
env.yaml		env.yaml
init.sra_index.sh		init.sra_index.sh
main.nf		main.nf
nextflow.config		nextflow.config
run.nextflow.sh		run.nextflow.sh
set.archived.sh		set.archived.sh
update.metadata.sh		update.metadata.sh
update.receipt.sh		update.receipt.sh
view_illumina_to_be_processed.sql		view_illumina_to_be_processed.sql
view_nanopore_to_be_processed.sql		view_nanopore_to_be_processed.sql

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