Build a docker image with latest R and packages single-cell data analysis.
This image is available from: davismcc/r-singlecell-img
This repo defines an installatin of the latest version of R bootstrapping the davismcc/r-tidybioc-img (and rocker/verse and bioconductor/release_core2) docker images.
This repo adds the following packages (if not already installed in the bootstrapped images):
- beachmat
- Canopy
- cardelino
- destiny
- edgeR
- limma
- MultiAssayExperiment
- org.Hs.eg.db
- org.Mm.eg.db
- pcaMethods
- Rtsne
- scater
- scran
- slalom
- vcfR