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fix plotting with transposed nondim coords. (pydata#3441)
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* make plotting work with transposed nondim coords.

* Additional test.

* Test to make sure transpose is right

* Undo the transpose change and add test to make sure transposition is right.

* fix whats-new merge.

* proper fix.

* fix whats-new

* Fix whats-new
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dcherian authored Dec 4, 2019
1 parent 308bb37 commit 577d3a7
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Showing 3 changed files with 49 additions and 7 deletions.
2 changes: 2 additions & 0 deletions doc/whats-new.rst
Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,8 @@ New Features

Bug fixes
~~~~~~~~~
- Fix plotting with transposed 2D non-dimensional coordinates. (:issue:`3138`, :pull:`3441`)
By `Deepak Cherian <https://github.com/dcherian>`_.


Documentation
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25 changes: 18 additions & 7 deletions xarray/plot/plot.py
Original file line number Diff line number Diff line change
Expand Up @@ -672,10 +672,22 @@ def newplotfunc(

# check if we need to broadcast one dimension
if xval.ndim < yval.ndim:
xval = np.broadcast_to(xval, yval.shape)
dims = darray[ylab].dims
if xval.shape[0] == yval.shape[0]:
xval = np.broadcast_to(xval[:, np.newaxis], yval.shape)
else:
xval = np.broadcast_to(xval[np.newaxis, :], yval.shape)

if yval.ndim < xval.ndim:
yval = np.broadcast_to(yval, xval.shape)
elif yval.ndim < xval.ndim:
dims = darray[xlab].dims
if yval.shape[0] == xval.shape[0]:
yval = np.broadcast_to(yval[:, np.newaxis], xval.shape)
else:
yval = np.broadcast_to(yval[np.newaxis, :], xval.shape)
elif xval.ndim == 2:
dims = darray[xlab].dims
else:
dims = (darray[ylab].dims[0], darray[xlab].dims[0])

# May need to transpose for correct x, y labels
# xlab may be the name of a coord, we have to check for dim names
Expand All @@ -685,10 +697,9 @@ def newplotfunc(
# we transpose to (y, x, color) to make this work.
yx_dims = (ylab, xlab)
dims = yx_dims + tuple(d for d in darray.dims if d not in yx_dims)
if dims != darray.dims:
darray = darray.transpose(*dims, transpose_coords=True)
elif darray[xlab].dims[-1] == darray.dims[0]:
darray = darray.transpose(transpose_coords=True)

if dims != darray.dims:
darray = darray.transpose(*dims, transpose_coords=True)

# Pass the data as a masked ndarray too
zval = darray.to_masked_array(copy=False)
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29 changes: 29 additions & 0 deletions xarray/tests/test_plot.py
Original file line number Diff line number Diff line change
Expand Up @@ -265,6 +265,7 @@ def test2d_1d_2d_coordinates_contourf(self):
)

a.plot.contourf(x="time", y="depth")
a.plot.contourf(x="depth", y="time")

def test3d(self):
self.darray.plot()
Expand Down Expand Up @@ -2149,3 +2150,31 @@ def test_yticks_kwarg(self, da):
da.plot(yticks=np.arange(5))
expected = np.arange(5)
assert np.all(plt.gca().get_yticks() == expected)


@requires_matplotlib
@pytest.mark.parametrize("plotfunc", ["pcolormesh", "contourf", "contour"])
def test_plot_transposed_nondim_coord(plotfunc):
x = np.linspace(0, 10, 101)
h = np.linspace(3, 7, 101)
s = np.linspace(0, 1, 51)
z = s[:, np.newaxis] * h[np.newaxis, :]
da = xr.DataArray(
np.sin(x) * np.cos(z),
dims=["s", "x"],
coords={"x": x, "s": s, "z": (("s", "x"), z), "zt": (("x", "s"), z.T)},
)
getattr(da.plot, plotfunc)(x="x", y="zt")
getattr(da.plot, plotfunc)(x="zt", y="x")


@requires_matplotlib
@pytest.mark.parametrize("plotfunc", ["pcolormesh", "imshow"])
def test_plot_transposes_properly(plotfunc):
# test that we aren't mistakenly transposing when the 2 dimensions have equal sizes.
da = xr.DataArray([np.sin(2 * np.pi / 10 * np.arange(10))] * 10, dims=("y", "x"))
hdl = getattr(da.plot, plotfunc)(x="x", y="y")
# get_array doesn't work for contour, contourf. It returns the colormap intervals.
# pcolormesh returns 1D array but imshow returns a 2D array so it is necessary
# to ravel() on the LHS
assert np.all(hdl.get_array().ravel() == da.to_masked_array().ravel())

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