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@deepgenomics

Deep Genomics

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  1. GenomeKit GenomeKit Public

    A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations

    Python 36 2

  2. UTR_variants_DL_manuscript UTR_variants_DL_manuscript Public

    Code for the UTR P/LP variants manuscript

    Jupyter Notebook 3

  3. lim_2021_data lim_2021_data Public

    Data-munging code for Lim et al. (2021) (https://dx.doi.org/10.1038/s41467-021-24445-6) ("Multiplexed functional genomic analysis of 5’ untranslated region mutations across the spectrum of prostate…

    Python 1

  4. prospr prospr Public

    Forked from dellacortelab/prospr

    ProSPr: Protein Structure Prediction

    Jupyter Notebook

  5. wdl-runner wdl-runner Public

    Forked from broadinstitute/wdl-runner

    Easily run WDL workflows on GCP

    Python

  6. REMBRANDTS REMBRANDTS Public

    Forked from csglab/REMBRANDTS

    REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    R

Repositories

Showing 10 of 10 repositories
  • GenomeKit Public

    A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations

    deepgenomics/GenomeKit’s past year of commit activity
    Python 36 Apache-2.0 2 6 0 Updated Jan 25, 2025
  • cromwell-monitor Public Forked from broadinstitute/cromwell-monitor-deprecated

    Generate stats for Cromwell task calls including resource utilization & estimated costs

    deepgenomics/cromwell-monitor’s past year of commit activity
    Python 0 9 6 (1 issue needs help) 0 Updated Nov 8, 2024
  • cromwell Public Forked from broadinstitute/cromwell

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    deepgenomics/cromwell’s past year of commit activity
    Scala 0 BSD-3-Clause 365 0 0 Updated Nov 7, 2024
  • wdl-runner Public Forked from broadinstitute/wdl-runner

    Easily run WDL workflows on GCP

    deepgenomics/wdl-runner’s past year of commit activity
    Python 0 BSD-3-Clause 11 0 0 Updated Sep 30, 2024
  • staged-recipes Public Forked from conda-forge/staged-recipes

    A fork of conda-forge to facilitate publishing GenomeKit

    deepgenomics/staged-recipes’s past year of commit activity
    Python 0 BSD-3-Clause 5,122 0 0 Updated Mar 16, 2024
  • UTR_variants_DL_manuscript Public

    Code for the UTR P/LP variants manuscript

    deepgenomics/UTR_variants_DL_manuscript’s past year of commit activity
    Jupyter Notebook 3 Apache-2.0 0 0 0 Updated Jul 19, 2023
  • prospr Public Forked from dellacortelab/prospr

    ProSPr: Protein Structure Prediction

    deepgenomics/prospr’s past year of commit activity
    Jupyter Notebook 0 LGPL-3.0 86 0 0 Updated Sep 19, 2022
  • REMBRANDTS Public Forked from csglab/REMBRANDTS

    REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    deepgenomics/REMBRANDTS’s past year of commit activity
    R 0 11 0 0 Updated Sep 19, 2022
  • CellProfiler-core Public Forked from CellProfiler/core

    Core classes and components used by CellProfiler

    deepgenomics/CellProfiler-core’s past year of commit activity
    Python 0 24 0 0 Updated Sep 19, 2022
  • lim_2021_data Public

    Data-munging code for Lim et al. (2021) (https://dx.doi.org/10.1038/s41467-021-24445-6) ("Multiplexed functional genomic analysis of 5’ untranslated region mutations across the spectrum of prostate cancer")

    deepgenomics/lim_2021_data’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Sep 16, 2022

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