docs: add document equations for se_atten_v2

doc/model/train-se-atten.md

@@ -21,7 +21,11 @@ Attention-based descriptor $\mathcal{D}^i \in \mathbb{R}^{M \times M_{<}}$, whic
 ```
 
 where $\hat{\mathcal{G}}^i$ represents the embedding matrix $\mathcal{G}^i$ after additional self-attention mechanism and $\mathcal{R}^i$ is defined by the full case in the [`se_e2_a`](./train-se-e2-a.md).
-Note that we obtain $\mathcal{G}^i$ using the type embedding method by default in this descriptor.
+Note that we obtain $\mathcal{G}^i$ using the type embedding method by default in this descriptor. By default, we concat $s(r_{ij})$ and the type embeddings of central and neighboring atoms $\mathcal{A}^i$ and $\mathcal{A}^j$ as input of the embedding network $\mathcal{N}_{e,2}$:
+
+```math
+   (\mathcal{G}^i)_j = \mathcal{N}_{e,2}(\{s(r_{ij}), \mathcal{A}^i, \mathcal{A}^j\})  \quad \mathrm{or}\quad(\mathcal{G}^i)_j = \mathcal{N}_{e,2}(\{s(r_{ij}), \mathcal{A}^j\})
+```
 
 To perform the self-attention mechanism, the queries $\mathcal{Q}^{i,l} \in \mathbb{R}^{N_c\times d_k}$, keys $\mathcal{K}^{i,l} \in \mathbb{R}^{N_c\times d_k}$, and values $\mathcal{V}^{i,l} \in \mathbb{R}^{N_c\times d_v}$ are first obtained:
 
@@ -161,6 +165,12 @@ We highly recommend using the version 2.0 of the attention-based descriptor `"se
       "set_davg_zero": false
 ```
 
+The `tebd_input_mode` can take `"concat"` and `"strip"` as values. The default value in `"se_atten_v2"` is `"strip"`. When `tebd_input_mode` is set to `"strip"`, the embedding matrix $\mathcal{G}^i$ is constructed as:
+
+```math
+   (\mathcal{G}^i)_j = \mathcal{N}_{e,2}(s(r_{ij})) + \mathcal{N}_{e,2}(s(r_{ij})) \odot ({N}_{e,2}(\{\mathcal{A}^i, \mathcal{A}^j\}) \odot s(r_{ij})) \quad \mathrm{or}\quad (\mathcal{G}^i)_j = \mathcal{N}_{e,2}(s(r_{ij})) + \mathcal{N}_{e,2}(s(r_{ij})) \odot ({N}_{e,2}(\{\mathcal{A}^j\}) \odot s(r_{ij}))
+```
+
 Practical evidence demonstrates that `"se_atten_v2"` offers better and more stable performance compared to `"se_atten"`.
 
 Notice: Model compression for the `se_atten_v2` descriptor is exclusively designed for models with the training parameter {ref}`attn_layer <model/descriptor[se_atten_v2]/attn_layer>` set to 0.