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DeepOmics Lab

Focus on Bioinformatics Toolkits Development

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Welcome to DeepomicsLab!

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  1. GCNFrame GCNFrame Public

    This is a python package for genomics study with a GCN framework.

    Python 39 7

  2. SpecHLA SpecHLA Public

    SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read…

    C++ 38 9

  3. DeepHost DeepHost Public

    This is the repository for DeepHost, a phage host prediction tool.

    Python 17

  4. LocalHGT LocalHGT Public

    Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

    Python 13 1

  5. SpecHap SpecHap Public

    C++ 12 3

  6. SeCNV SeCNV Public

    This is the repository for SeCNV, a single cell copy number profiling tool.

    Python 10 2

Repositories

Showing 10 of 57 repositories
  • deepomicslab/mrnadesign_web’s past year of commit activity
    Vue 0 0 0 0 Updated Nov 21, 2024
  • deepomicslab/mrnadesign_api’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 21, 2024
  • TCRclub Public
    deepomicslab/TCRclub’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 20, 2024
  • deepomicslab/TCREmbedding’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Nov 15, 2024
  • SPIDER Public
    deepomicslab/SPIDER’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 1, 2024
  • deepomicslab/SPIDER-paper’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 30, 2024
  • DeepTAPE-1.0 Public

    DeepTAPE is an advanced deep learning tool designed to provide reference diagnostics for SLE, leveraging pre-trained models and supporting custom training within its framework.

    deepomicslab/DeepTAPE-1.0’s past year of commit activity
    Python 0 0 0 0 Updated Oct 25, 2024
  • STAGUE Public
    deepomicslab/STAGUE’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Oct 22, 2024
  • deepomicslab/AlphaTalk’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 21, 2024
  • StrInt Public
    deepomicslab/StrInt’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 21, 2024

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