Changing default legend location to 'best'. #1042
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* Added dataRange to computeMatricOperation to return min,max,median and 10th and 90th percentile. * fixed pep8 * more pep8 fix * fixed test_sieve of azure tests * one more fix for test_sieve * imported pysam to test_readFiltering.py * updated hash values for test_sieve * fixed galaxy computeMatrixOperation.xml * More fixes for galaxy wrapper
…e with running plotheatmap on it again (deeptools#968)
* Now colors can be set by user for any heatmap in plotProfile. A bug in tick index for plotting heatmap is also fixed. * added a small description * pep8 fix
* added auto to plotheatmap * fixed lint, added warning message, updated the help for zmin, zmax * galaxy test plotPCA * lower down the delat for potPCA galaxy test Co-authored-by: Leily Rabbani <rabbani@pc390.ie-freiburg.mpg.de>
* fix deeptools#969 * PEP8 * updated changes.txt * fixed a little bug in parseCommon.py which caused flake8 failure. * [WIP] added auto to plotheatmap deeptools#908 (deeptools#982) * added auto to plotheatmap * fixed lint, added warning message, updated the help for zmin, zmax * galaxy test plotPCA * lower down the delat for potPCA galaxy test Co-authored-by: Leily Rabbani <rabbani@pc390.ie-freiburg.mpg.de> * updated version and changes * removed alpha from plotPCA test * removed compare="sim_size" Co-authored-by: Devon Ryan <devon.ryan@genedata.com> Co-authored-by: Leily Rabbani <rabbani@pc390.ie-freiburg.mpg.de> Co-authored-by: LeilyR <leila.rabbani@gmail.com>
… anitizer for the 2 new params.
Added sortUsingSamples and clusterUsingSamples to the galaxy wrapper
* updated cmp usage to fit the recent mpl updates. * updated the requirements.txt
* change "NA" occurences in plotFingerprint.py to proper numpy.NAN * update expected plotFingerprint output in galaxy from NA to nan
fixed xml error brought up in 1003
Trying to solve deeptools#1041
* Fixes for 3.4.2 * disable azure on OSX * Closes deeptools#945 * computeMatricOperation dataRange (deeptools#951) * Added dataRange to computeMatricOperation to return min,max,median and 10th and 90th percentile. * fixed pep8 * more pep8 fix * fixed test_sieve of azure tests * one more fix for test_sieve * imported pysam to test_readFiltering.py * updated hash values for test_sieve * fixed galaxy computeMatrixOperation.xml * More fixes for galaxy wrapper * fixed a little typo in bamCompare (deeptools#967) * save the output matrix of the plotheatmap in a format to be compatible with running plotheatmap on it again (deeptools#968) * Plot profile color map (deeptools#971) * Now colors can be set by user for any heatmap in plotProfile. A bug in tick index for plotting heatmap is also fixed. * added a small description * pep8 fix * added sortUsingSamples and clusterUsingSamples to the galaxy wrapper * [WIP] added auto to plotheatmap deeptools#908 (deeptools#982) * added auto to plotheatmap * fixed lint, added warning message, updated the help for zmin, zmax * galaxy test plotPCA * lower down the delat for potPCA galaxy test * fix deeptools#969 (deeptools#970) * fix deeptools#969 * PEP8 * updated changes.txt * fixed a little bug in parseCommon.py which caused flake8 failure. * [WIP] added auto to plotheatmap deeptools#908 (deeptools#982) * added auto to plotheatmap * fixed lint, added warning message, updated the help for zmin, zmax * galaxy test plotPCA * lower down the delat for potPCA galaxy test * updated version and changes * removed alpha from plotPCA test * removed compare="sim_size" * fixed plotHeatmap.xml by removing size from the the params and adding anitizer for the 2 new params. * upated change.txt * updated the doc html Co-authored-by: Devon Ryan <dpryan79@users.noreply.github.com>
Trying to solve deeptools#1041
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Could you please send your initial commit as a PR to our develop branch instead of the master? Otherwise I can quickly fix that too and close your PR. |
Not sure exactly what you mean by "send your initial commit...". I tried to rebase on develop as you suggested. It is probably simpler if you fix it "manually". |
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Trying to solve #1041
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