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refactor: Improve handling of observation values in flattenfhir.py
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dermatologist committed Jul 3, 2024
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Expand Up @@ -9,21 +9,17 @@ Virtual flattened view of *FHIR Bundle / ndjson / FHIR server / BigQuery!*
into ML packages such as Tensorflow and PyTorch. **FHIRy also supports FHIR server search and FHIR tables on BigQuery.**

## UPDATE
Recently added support for **LLM based natural language queries** of FHIR bundles/ndjson using [llama-index](examples/llm_example.py). Please install the llm extras from the develop branch as follows. Please be cognizant of the privacy issues with publically hosted LLMs. Any feedback will be highly appreciated. [See usage](examples/llm_example.py)!
Recently added support for **LLM based natural language queries** of FHIR bundles/ndjson using [llama-index](examples/llm_example.py). Please install the llm extras as follows. Please be cognizant of the privacy issues with publically hosted LLMs. Any feedback will be highly appreciated. [See usage](examples/llm_example.py)!

```
git clone https://github.com/dermatologist/fhiry.git@develop
cd fhiry
pip install -e .[llm]
pip install fhiry[llm]
```
[See usage](examples/llm_example.py).

Test this with the [synthea sample](https://synthea.mitre.org/downloads) or the downloaded ndjson from the [SMART Bulk data server](https://bulk-data.smarthealthit.org/). Use the 'Discussions' tab above for feature requests.

:sparkles: Checkout [this template](https://github.com/dermatologist/kedro-multimodal) for Multimodal machine learning in healthcare!

:fire: Checkout [MedPrompt](https://github.com/dermatologist/medprompt) for Medical LLM prompts, including FHIR related prompts, such as text-to-FHIRQuery mapper!


## Installation

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