DES-SN5YR Pippin Release

Release version used in the DES-SN5YR Analysis & Data Release

What's Changed

Update paper.md by @arfon in #3
Pa test by @OmegaLambda1998 in #34
Prioritise replaceing REPLACE_* by @OmegaLambda1998 in #36
Added batch_size, num_layers, and hidden_dim to Supernnova. Removed s… by @OmegaLambda1998 in #37
extra_cov by @djbrout in #40
extra_cov by @djbrout in #41
add scone classifier by @helenqu in #42
add scone to classifier factory, manager.py; add scone_gpu env by @helenqu in #43
fix docstring, write predictions.csv file by @helenqu in #44
Supernnova input yml by @OmegaLambda1998 in #47
Unhardcoded dataprep by @OmegaLambda1998 in #54
add PHOTFLAG_MSKREJ key by @OmegaLambda1998 in #55
Added check to abort on train mode with PerfectClassifier, UnityClass… by @OmegaLambda1998 in #56
Issue59 by @OmegaLambda1998 in #60
Added -S (--syntax) command line option. by @OmegaLambda1998 in #62
Added $HOSTNAME to config by @OmegaLambda1998 in #63
Cleaning up old comments by @OmegaLambda1998 in #64
Fixed -S option to tell you the tasks if no task is specified by @OmegaLambda1998 in #65
Changed how batch headers are read, added BATCH_FILE option to specif… by @OmegaLambda1998 in #66
Changed COSMOMC to COSMOFIT to allow for more cosmological fitters to… by @OmegaLambda1998 in #73
Updated and sped up -S option by @OmegaLambda1998 in #74
Fixing Analyse Task by @OmegaLambda1998 in #77
Added EXTERNAL_MAP key, allowing many-to-one relationships to be more… by @OmegaLambda1998 in #86
Update legacy keys and allow excluding of cosmomc directory by @OmegaLambda1998 in #88
Added functionality for including external anchors by @OmegaLambda1998 in #90
Issue #91: Implemented a MERGE_CLASSIFIER key to AGGREGATION to allow… by @OmegaLambda1998 in #94
Don't fail if simfile/varname not defined by @OmegaLambda1998 in #95
Added compressing and uncompression functionality. Disabled by defaul… by @OmegaLambda1998 in #96
scone changes by @helenqu in #97
fix some scone bugs by @helenqu in #99
scone: set gpu header if desired, fix bug arising from not indexing t… by @helenqu in #100
scone: read in types from simulation if available by @helenqu in #101
scone: make sure types is a dict, make sure snid is first col of pred… by @helenqu in #103
Scone: use slurm dependencies to submit heatmaps and model jobs simultaneously by @helenqu in #104
scone: fix silly syntax error by @helenqu in #105
Issue102 by @OmegaLambda1998 in #106
Ensure num_errs is never None by @benjaminrose in #109
scone: various fixes by @helenqu in #110
CVE-2007-4559 Patch by @TrellixVulnTeam in #112
scone: fix wrong output log location, cast all types to ints by @helenqu in #113
scone: change job time, memory limits by @helenqu in #114
Allow tasks to know their dependents. Only compress if you have no de… by @OmegaLambda1998 in #115
scone: stop asking for 8 cpus, only change pred column name once by @helenqu in #117
Add new redshift options to supernnova by @OmegaLambda1998 in #120
Move create_cov over to submit_batch by @OmegaLambda1998 in #121
Move create cov over to submit batch by @OmegaLambda1998 in #123
Moved CreateCov over to submit_batch by @OmegaLambda1998 in #124
Allow BATCH_REPLACE in GLOBAL by @OmegaLambda1998 in #126
Allow BATCH_REPLACE commands for submit_batch tasks by @OmegaLambda1998 in #127
Update classification.yml by @helenqu in #133
Update README.md by @helenqu in #134
add classifier combine functionality by @helenqu in #135
make all classifiers that don't support new COMBINE_MASK functionality raise a warning if it looks like it might be being used by @helenqu in #136
add docs about combine_mask functionality by @helenqu in #141
SCONE: change default to no GPU, remove dessn account to sbatch header by @helenqu in #142
Update classification.yml by @helenqu in #144
Update README.md by @helenqu in #143
Add SIMFILE_BIASCOR_FITOPTS and SIMFILE_CCPRIOR_FITOPTS keys to BIASCOR by @OmegaLambda1998 in #147
prevent predicting on SIM_FRACTION < 1 for classifiers by @helenqu in #152
SCONE: make slurm memory a user-facing option by @helenqu in #153
change scone location by @helenqu in #160
add REFACTORED and LEGACY options to scone for debugging refactor by @helenqu in #161
Scone refactor integration by @OmegaLambda1998 in #168
Update README.md by @OmegaLambda1998 in #170
Update documentation and README by @OmegaLambda1998 in #171