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1. UMI-analysis UMI-analysis Public

   Scripts for processing Illumina sequence data containing unique molecular identifiers (UMI)

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2. bigSCale bigSCale Public

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3. rnaseq_tutorial rnaseq_tutorial Public

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   An educational tutorial and working demonstration pipeline for RNA-seq analysis including an introduction to: cloud computing, next generation sequence file formats, reference genomes, gene annotat…

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4. HybPhyloMaker HybPhyloMaker Public

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   Bash scripts for analysis of HybSeq raw data

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5. Hyb-Seq_protocol Hyb-Seq_protocol Public

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   A protocol for designing probes for targeted sequence capture from the input of genomic and transcriptomic data, and methods for analyzing the resulting sequence data.

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6. HybPiper HybPiper Public

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   Recovering genes from targeted sequence capture data

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