Make compatible with constraints in py3.12

.devcontainer/.bashrc

@@ -2,10 +2,3 @@
 PS1='${debian_chroot:+($debian_chroot)}\h:\w\[\033[1;36m\]$ \[\033[00m\]'
 
 export PATH=$PATH:$HOME/.local/bin
-
-#check if package is already installed before installing it
-if ! python -c "import seismometer" 2> /dev/null; then
-  pip install pre-commit
-  pip install -r /home/seismo/workspace/requirements.txt
-  pre-commit install
-fi

.devcontainer/image/Dockerfile

@@ -1,13 +1,21 @@
-FROM python:3.11-slim as seismometer
+FROM python:3.12-slim as seismometer
 
 RUN useradd --create-home --uid 1000 --shell /bin/bash seismo
 ENV PATH=${PATH}:/home/seismo/.local/bin
 
-COPY ./stagefiles /env/
+# split copy to allow more caching of layers 
+#COPY ./stagefiles /env
+COPY ./stagefiles/layer.sh /env/layer.sh
 RUN /bin/sh /env/layer.sh
 
 USER seismo
-RUN pip install --no-cache-dir -r /env/python/requirements.txt
+
+COPY ./stagefiles/python /env/python
+RUN pip install --no-cache-dir -c /env/python/constraints.txt -r /env/python/requirements.txt
+RUN pip install --no-cache-dir -c /env/python/constraints.txt -r /env/python/requirements-dev.txt 
+
+COPY ./stagefiles/audit_install.sh /env/audit_install.sh
+RUN /bin/sh /env/audit_install.sh
 
 # https://github.com/opencontainers/image-spec/blob/main/annotations.md
 LABEL \

.devcontainer/image/stagefiles/audit_install.sh

@@ -0,0 +1,6 @@
+set -e
+
+export DEBIAN_FRONTEND=noninteractive
+
+pip install -c /env/python/constraints.txt -r /env/python/requirements-audit.txt
+pip install --no-deps aequitas

.devcontainer/image/stagefiles/python/constraints.txt

@@ -0,0 +1,341 @@
+absl-py==2.1.0
+adagio==0.2.4
+aiohttp==3.9.3
+aiosignal==1.3.1
+alabaster==0.7.16
+alembic==1.13.1
+altair==4.2.2
+annotated-types==0.6.0
+antlr4-python3-runtime==4.11.1
+anyio==4.3.0
+appdirs==1.4.4
+argon2-cffi==23.1.0
+argon2-cffi-bindings==21.2.0
+arrow==1.3.0
+astroid==3.1.0
+asttokens==2.4.1
+astunparse==1.6.3
+async-generator==1.10
+async-lru==2.0.4
+attrs==23.2.0
+autograd==1.6.2
+autograd-gamma==0.5.0
+autopep8==2.0.4
+babel==2.14.0
+bcrypt==4.1.2
+beautifulsoup4==4.12.3
+black==24.2.0
+bleach==6.1.0
+blinker==1.7.0
+bokeh==3.4.1
+cachetools==5.3.3
+catboost==1.2.3
+certifi==2024.2.2
+certipy==0.1.3
+cffi==1.16.0
+charset-normalizer==3.3.2
+click==8.1.7
+cloudpickle==3.0.0
+cmdstanpy==1.2.1
+colorama==0.4.6
+colorlog==6.8.2
+comm==0.2.1
+contourpy==1.2.0
+coverage==7.4.3
+cryptography==42.0.5
+cycler==0.12.1
+Cython==3.0.9
+darts==0.28.0
+dash==2.16.1
+dash-core-components==2.0.0
+dash-cytoscape==1.0.0
+dash-html-components==2.0.0
+dash-table==5.0.0
+dask==2024.2.1
+debugpy==1.8.1
+decorator==5.1.1
+defusedxml==0.7.1
+dill==0.3.8
+distlib==0.3.8
+distributed==2024.2.1
+dm-tree==0.1.8
+docutils==0.20.1
+entrypoints==0.4
+et-xmlfile==1.1.0
+executing==2.0.1
+fairlearn==0.10.0
+fastjsonschema==2.19.1
+filelock==3.13.1
+flask==3.0.2
+flatbuffers==24.3.7
+fonttools==4.49.0
+formulaic==1.0.1
+fqdn==1.5.1
+frozenlist==1.4.1
+fs==2.4.16
+fsspec==2024.2.0
+fugue==0.8.7
+fugue-sql-antlr==0.2.0
+future==1.0.0
+gast==0.5.4
+geographiclib==2.0
+geopy==2.4.1
+gevent==24.2.1
+gitdb==4.0.11
+gitpython==3.1.42
+google-pasta==0.2.0
+graphviz==0.20.1
+great-expectations==0.18.10
+greenlet==3.0.3
+grpcio==1.62.0
+h11==0.14.0
+h5py==3.10.0
+holidays==0.44
+httpcore==1.0.4
+httpx==0.27.0
+idna==3.6
+imagesize==1.4.1
+importlib-metadata==7.0.2
+importlib-resources==6.1.3
+iniconfig==2.0.0
+interface-meta==1.3.0
+interpret==0.5.1
+interpret-core==0.5.1
+ipykernel==6.29.3
+ipython==8.22.2
+ipywidgets==8.1.2
+isoduration==20.11.0
+isort==5.13.2
+itsdangerous==2.1.2
+jedi==0.19.1
+jinja2==3.1.3
+joblib==1.3.2
+json5==0.9.22
+jsonpatch==1.33
+jsonpointer==2.4
+jsonschema==4.21.1
+jsonschema-specifications==2023.12.1
+jupyter==1.0.0
+jupyter-client==8.6.0
+jupyter-console==6.6.3
+jupyter-core==5.7.1
+jupyter-events==0.9.0
+jupyterhub==4.0.2
+jupyterlab==4.1.4
+jupyterlab-pygments==0.3.0
+jupyterlab-server==2.25.3
+jupyterlab-widgets==3.0.10
+jupyter-lsp==2.2.4
+jupyter-server==2.13.0
+jupyter-server-terminals==0.5.2
+jupyter-telemetry==0.1.0
+keras==3.0.5
+kiwisolver==1.4.5
+libclang==16.0.6
+lifelines==0.28.0
+lightgbm==4.3.0
+lightning-utilities==0.10.1
+llvmlite==0.42.0
+locket==1.0.0
+lz4==4.3.3
+makefun==1.15.2
+Mako==1.3.2
+markdown==3.5.2
+markdown-it-py==3.0.0
+markupsafe==2.1.5
+marshmallow==3.21.1
+matplotlib==3.8.3
+matplotlib-inline==0.1.6
+mccabe==0.7.0
+mdurl==0.1.2
+mistune==3.0.2
+ml-dtypes==0.3.2
+mlxtend==0.23.1
+modin==0.28.0
+mord==0.7
+mpmath==1.3.0
+msgpack==1.0.8
+multidict==6.0.5
+multiprocess==0.70.16
+mypy==1.9.0
+mypy-extensions==1.0.0
+namex==0.0.7
+nbclient==0.9.0
+nbconvert==7.16.2
+nbformat==5.9.2
+nest-asyncio==1.6.0
+networkx==3.2.1
+nfoursid==1.0.1
+nltk==3.8.1
+notebook==7.1.1
+notebook-shim==0.2.4
+numba==0.59.0
+numpy==1.26.4
+oauthlib==3.2.2
+openpyxl==3.1.2
+opt-einsum==3.3.0
+optuna==3.5.0
+overrides==7.7.0
+packaging==23.2
+pandas==2.2.1
+pandas-flavor==0.6.0
+pandocfilters==1.5.1
+paramiko==3.4.0
+parso==0.8.3
+partd==1.4.1
+pathspec==0.12.1
+patsy==0.5.6
+pillow==10.2.0
+pingouin==0.5.4
+pip==24.0
+platformdirs==4.2.0
+plotly==5.19.0
+pluggy==1.4.0
+pmdarima==2.0.4
+polars==0.20.14
+prometheus-client==0.20.0
+prompt-toolkit==3.0.43
+prophet==1.1.5
+protobuf==4.25.3
+psmpy==0.3.13
+psutil==5.9.8
+pure-eval==0.2.2
+pyarrow==15.0.1
+pyarrow-hotfix==0.6
+pycodestyle==2.11.1
+pycparser==2.21
+pydantic==2.6.3
+pydantic-core==2.16.3
+pydeck==0.8.1b0
+pygments==2.17.2
+pylint==3.1.0
+pynacl==1.5.0
+pyod==1.1.3
+pyodbc==5.1.0
+pyOpenSSL==24.0.0
+pyparsing==3.1.2
+pysftp==0.2.9
+pytest==8.0.2
+pytest-cov==4.1.0
+python-dateutil==2.9.0.post0
+python-json-logger==2.0.7
+pytorch-lightning==2.2.1
+pytz==2024.1
+pywin32==306
+pywinpty==2.0.13
+pyyaml==6.0.1
+pyzmq==25.1.2
+qpd==0.4.4
+qtconsole==5.5.1
+qtpy==2.4.1
+referencing==0.33.0
+regex==2023.12.25
+requests==2.31.0
+researchpy==0.3.6
+retrying==1.3.4
+rfc3339-validator==0.1.4
+rfc3986-validator==0.1.1
+rich==13.7.1
+rpds-py==0.18.0
+rpy2==3.5.15
+ruamel.yaml==0.17.17
+ruptures==1.1.9
+SALib==1.4.8
+scikit-learn==1.4.1.post1
+scikit-posthocs==0.9.0
+scipy==1.12.0
+seaborn==0.13.2
+Send2Trash==1.8.2
+setuptools==69.1.1
+shap==0.45.0
+Shapely==2.0.3
+six==1.16.0
+slicer==0.0.7
+smmap==5.0.1
+sniffio==1.3.1
+snowballstemmer==2.2.0
+sortedcontainers==2.4.0
+soupsieve==2.5
+sphinx==7.2.6
+sphinxcontrib-applehelp==1.0.8
+sphinxcontrib-devhelp==1.0.6
+sphinxcontrib-htmlhelp==2.0.5
+sphinxcontrib-jsmath==1.0.1
+sphinxcontrib-qthelp==1.0.7
+sphinxcontrib-serializinghtml==1.1.10
+sqlalchemy==2.0.28
+sqlglot==22.2.1
+stack-data==0.6.3
+stanio==0.3.0
+statistics==1.0.3.5
+statsforecast==1.7.3
+statsmodels==0.14.1
+streamlit==1.32.0
+sympy==1.12
+tabulate==0.9.0
+tbats==1.1.3
+tblib==3.0.0
+tenacity==8.2.3
+tensorboard==2.16.2
+tensorboard-data-server==0.7.2
+tensorboardx==2.6.2.2
+tensorflow==2.16.0rc0
+tensorflow-intel==2.16.0rc0
+termcolor==2.4.0
+terminado==0.18.0
+textdistance==4.6.1
+threadpoolctl==3.3.0
+tinycss2==1.2.1
+toml==0.10.2
+tomlkit==0.12.4
+toolz==0.12.1
+torch==2.2.1
+torchaudio==2.2.1
+torchmetrics==1.3.1
+torchvision==0.17.1
+tornado==6.4
+tqdm==4.66.2
+traitlets==5.14.1
+triad==0.9.5
+types-python-dateutil==2.8.19.20240106
+typing-extensions==4.10.0
+tzdata==2024.1
+tzlocal==5.2
+uri-template==1.3.0
+urllib3==2.2.1
+utilsforecast==0.1.1
+virtualenv==20.25.1
+watchdog==4.0.0
+wcwidth==0.2.13
+webcolors==1.13
+webencodings==0.5.1
+websocket-client==1.7.0
+werkzeug==3.0.1
+wheel==0.42.0
+widgetsnbextension==4.0.10
+wrapt==1.16.0
+xarray==2024.2.0
+xgboost==2.0.3
+xlsx2csv==0.8.2
+xyzservices==2024.4.0
+yarl==1.9.4
+zict==3.0.0
+zipp==3.17.0
+zope.event==5.0
+zope.interface==6.2
+
+dask-ml==2024.4.4
+dask-glm==0.3.2
+multipledispatch==1.0.0
+sparse==0.15.3
+
+visions==0.7.6
+htmlmin==0.1.12
+phik==0.12.4
+multimethod==1.11.2
+typeguard==4.2.1
+imagehash==4.3.1
+wordcloud==1.9.3
+dacite==1.8.1
+pywavelets==1.6.0
+captum==0.7.0

.devcontainer/image/stagefiles/python/requirements-audit.txt

@@ -0,0 +1,11 @@
+millify==0.1.1
+aif360>=0.5.0
+fairgbm==0.9.14
+hydra-core #0.11.3
+validators>=0.22.0
+hyperparameter-tuning>=0.3.1
+fastparquet==2024.2.0
+
+altair #4.2.2
+fairlearn>=0.8.0
+#numpy