You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Error seems to occur during linear gene expression counting step:
Started linear gene expression counting for 7EN2.pairedAligned.out.bam => running mpileup for start positions [7EN2.pairedAligned.out.bam] return self.map_async(func, iterable, chunksize).get() File "/ibios/tbi_cluster/11.4/x86_64/python/python-2.7.2/lib/python2.7/multiprocessing/pool.py", line 522, in get raise self._value IOError: [Errno 2] No such file or directory: '_tmp_DCC/tmp_/AK173.pairedAligned.out.bam_YF5U7D_junction.linear'
The text was updated successfully, but these errors were encountered:
The 'CircCoordinate' file now again has a proper column headers:
Issue #11, dealing with the slightly different annotations still needs to be resolved.
The issue arises when relative or absolute file locations are supplied to DCC. The temporary file name creation does not handle the removal of the path to the file.
File names from from samplesheet an mate files were used as template for temporary files without stripping possible relative or absolute paths. This error has been corrected, os.path.basename(path) now sanitizes the supplied file names.
Error seems to occur during linear gene expression counting step:
Started linear gene expression counting for 7EN2.pairedAligned.out.bam => running mpileup for start positions [7EN2.pairedAligned.out.bam] return self.map_async(func, iterable, chunksize).get() File "/ibios/tbi_cluster/11.4/x86_64/python/python-2.7.2/lib/python2.7/multiprocessing/pool.py", line 522, in get raise self._value IOError: [Errno 2] No such file or directory: '_tmp_DCC/tmp_/AK173.pairedAligned.out.bam_YF5U7D_junction.linear'
The text was updated successfully, but these errors were encountered: