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1 631069 631291 RP5-857K21.6 0 + intron-exon transcript,gene,exon 1 631069 631369 RP5-857K21.6 0 + intron-exon transcript,gene,exon
Additionally to the cases with different annotation order in the type2 column, there are others cases:
Annotation of circRNA regions has been corrected. Instead of only probing the interval (n,n) DCC now probes (n,n+1) and (n-1,n) for the left and right border respectively. This assures that the correct annotation is returned. For the special case the circRNA candidates start before and end after an annotated gene the candidate borders are now shown correctly as intergenic with the included linear gene annotation as hit.
While the positions of detected CircRNAs are the same between master and develop branch, the annotation itself differs.
Example:
631069 631291 RP5-857K21.6 0 + intron-exon exon,gene,transcript 1 631069 631369 RP5-857K21.6 0 + intron-exon exon,gene,transcript
1 631069 631291 RP5-857K21.6 0 + intron-exon transcript,gene,exon 1 631069 631369 RP5-857K21.6 0 + intron-exon transcript,gene,exon
Additionally to the cases with different annotation order in the type2 column, there are others cases:
1 10095461 10105744 UBE4B 2 + exon-exon CDS,exon,gene,transcript 1 10117459 10119613 UBE4B 2 + exon-exon CDS,exon,gene,transcript
vs.
1 10095461 10105744 UBE4B 2 + exon-intron gene,transcript 1 10117459 10119613 UBE4B 2 + exon-intron gene,transcript
And also cases where the type is different:
1 24514314 24514567 RCAN3 2 + exon-exon CDS,UTR,exon,gene,start_codon,transcript 1 24514314 24531391 RCAN3 2 + exon-exon CDS,UTR,exon,gene,start_codon,transcript
vs.
1 24514314 24514567 RCAN3 2 + exon-intron gene,transcript 1 24514314 24531391 RCAN3 2 + exon-intron gene,transcript
Type exon-exon vs. exon-intron.
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