Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Single end reads and function checkjunctionfiles #9

Closed
CDieterich opened this issue Jul 8, 2016 · 3 comments
Closed

Single end reads and function checkjunctionfiles #9

CDieterich opened this issue Jul 8, 2016 · 3 comments
Assignees
@tjakobi

Comments

@CDieterich
Copy link

if checkjunctionfiles(options.Input, options.mate1, options.mate2):
logging.info("circRNA detection skipped due to empty junction files")
print("circRNA detection skipped due to empty junction files")

Please make sure that the software works even if options.mate1 and options.mate2
are not given (i.e. single end sequencing)
@CDieterich
Copy link
Author

BTW,

File "build/bdist.linux-x86_64/egg/DCC/main.py", line 451, in checkjunctionfiles
TypeError: object of type 'NoneType' has no len()

@CDieterich
Copy link
Author

File "build/bdist.linux-x86_64/egg/DCC/main.py", line 451, in checkjunctionfiles
TypeError: object of type 'NoneType' has no len()

@CDieterich CDieterich reopened this Jul 8, 2016
tjakobi added a commit that referenced this issue Jul 8, 2016
@tjakobi
Fixed issue #9.
0206549 
Bumped version to 0.3.4.

DCC now checks correctly if paired independent mode is enabled and checks if all required junctions files are given via -mt1 and -mt2. A warning message is generated when -Pi is specified but -mt1, -mt2 or both are missing. In this case -Pi is disabled automatically.
@tjakobi
Copy link
Contributor

tjakobi commented Jul 8, 2016

Thank your for reporting the issue.
The issue was addressed in the new release 0.3.4.

tjakobi added a commit that referenced this issue Jul 8, 2016
@tjakobi
Merged over fixed for issue #9 from master.
2693816 
Bumped version to 0.4.1.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@tjakobi tjakobi

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@tjakobi @CDieterich