Fixes for numpy 2.0. #9705
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: XGBoost-R-Tests | |
| on: [push, pull_request] | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| permissions: | |
| contents: read # to fetch code (actions/checkout) | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| lintr: | |
| runs-on: ${{ matrix.config.os }} | |
| name: Run R linters on OS ${{ matrix.config.os }}, R ${{ matrix.config.r }}, Compiler ${{ matrix.config.compiler }}, Build ${{ matrix.config.build }} | |
| strategy: | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| steps: | |
| - uses: actions/checkout@e2f20e631ae6d7dd3b768f56a5d2af784dd54791 # v2.5.0 | |
| with: | |
| submodules: 'true' | |
| - uses: r-lib/actions/setup-r@b7e68d63e51bdf225997973e2add36d551f60f02 # v2.8.7 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - name: Cache R packages | |
| uses: actions/cache@937d24475381cd9c75ae6db12cb4e79714b926ed # v3.0.11 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-r-${{ matrix.config.r }}-6-${{ hashFiles('R-package/DESCRIPTION') }} | |
| restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-6-${{ hashFiles('R-package/DESCRIPTION') }} | |
| - name: Install dependencies | |
| shell: Rscript {0} | |
| run: | | |
| source("./R-package/tests/helper_scripts/install_deps.R") | |
| - name: Run lintr | |
| run: | | |
| MAKEFLAGS="-j$(nproc)" R CMD INSTALL R-package/ | |
| Rscript tests/ci_build/lint_r.R $(pwd) | |
| test-Rpkg: | |
| runs-on: ${{ matrix.config.os }} | |
| name: Test R on OS ${{ matrix.config.os }}, R ${{ matrix.config.r }}, Compiler ${{ matrix.config.compiler }}, Build ${{ matrix.config.build }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release', compiler: 'mingw', build: 'autotools'} | |
| - {os: ubuntu-latest, r: 'release', compiler: 'none', build: 'cmake'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| steps: | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt install libcurl4-openssl-dev libssl-dev libssh2-1-dev libgit2-dev libglpk-dev libxml2-dev libharfbuzz-dev libfribidi-dev | |
| if: matrix.config.os == 'ubuntu-latest' | |
| - uses: actions/checkout@e2f20e631ae6d7dd3b768f56a5d2af784dd54791 # v2.5.0 | |
| with: | |
| submodules: 'true' | |
| - uses: r-lib/actions/setup-r@b7e68d63e51bdf225997973e2add36d551f60f02 # v2.8.7 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - name: Cache R packages | |
| uses: actions/cache@937d24475381cd9c75ae6db12cb4e79714b926ed # v3.0.11 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-r-${{ matrix.config.r }}-6-${{ hashFiles('R-package/DESCRIPTION') }} | |
| restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-6-${{ hashFiles('R-package/DESCRIPTION') }} | |
| - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5.0.0 | |
| with: | |
| python-version: "3.8" | |
| architecture: 'x64' | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - name: Install dependencies | |
| shell: Rscript {0} | |
| run: | | |
| source("./R-package/tests/helper_scripts/install_deps.R") | |
| - name: Test R | |
| run: | | |
| python tests/ci_build/test_r_package.py --compiler='${{ matrix.config.compiler }}' --build-tool="${{ matrix.config.build }}" --task=check | |
| if: matrix.config.compiler != 'none' | |
| - name: Test R | |
| run: | | |
| python tests/ci_build/test_r_package.py --build-tool="${{ matrix.config.build }}" --task=check | |
| if: matrix.config.compiler == 'none' | |
| test-R-on-Debian: | |
| name: Test R package on Debian | |
| runs-on: ubuntu-latest | |
| container: | |
| image: rhub/debian-gcc-release | |
| steps: | |
| - name: Install system dependencies | |
| run: | | |
| # Must run before checkout to have the latest git installed. | |
| # No need to add pandoc, the container has it figured out. | |
| apt update && apt install libcurl4-openssl-dev libssl-dev libssh2-1-dev libgit2-dev libglpk-dev libxml2-dev libharfbuzz-dev libfribidi-dev git -y | |
| - name: Trust git cloning project sources | |
| run: | | |
| git config --global --add safe.directory "${GITHUB_WORKSPACE}" | |
| - uses: actions/checkout@e2f20e631ae6d7dd3b768f56a5d2af784dd54791 # v2.5.0 | |
| with: | |
| submodules: 'true' | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| Rscript -e "source('./R-package/tests/helper_scripts/install_deps.R')" | |
| - name: Test R | |
| shell: bash -l {0} | |
| run: | | |
| python3 tests/ci_build/test_r_package.py --r=/usr/bin/R --build-tool=autotools --task=check | |
| - uses: dorny/paths-filter@v2 | |
| id: changes | |
| with: | |
| filters: | | |
| r_package: | |
| - 'R-package/**' | |
| - name: Run document check | |
| if: steps.changes.outputs.r_package == 'true' | |
| run: | | |
| python3 tests/ci_build/test_r_package.py --r=/usr/bin/R --task=doc |