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I just made the same changes on my own and got adequate, expected and logical behavior. I don't mean to be rude, but I just want to ask: why aren't these changes still in the original postgres image?
After all, this is a logical behavior - the user, if he needs it, adds his always-init.sh script to the always-init directory, if not needed - he does not add anything and postgres simply does nothing "always" (regardless of external conditions).