clear out a few dependencies

[denis-yuen]

Description
Clear out a few dependency updates, helps sort out which ones we want to keep

Review Instructions
Probably doesn't require review

Issue
https://ucsc-cgl.atlassian.net/browse/SEAB-5001

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• Check that you pass the basic style checks and unit tests by running ./mvnw clean install
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[sonarcloud]

SonarCloud Quality Gate failed.   

0 Bugs
0 Vulnerabilities
0 Security Hotspots
1 Code Smell

100.0% Coverage
0.0% Duplication

[codecov]

Codecov Report

Base: 68.57% // Head: 68.34% // Decreases project coverage by -0.23% ⚠️

Coverage data is based on head (3325aa5) compared to base (4789745).
Patch coverage: 100.00% of modified lines in pull request are covered.

Additional details and impacted files

@@             Coverage Diff             @@
##           develop     #205      +/-   ##
===========================================
- Coverage    68.57%   68.34%   -0.24%     
===========================================
  Files           49       49              
  Lines         6011     6014       +3     
  Branches       792      793       +1     
===========================================
- Hits          4122     4110      -12     
- Misses        1570     1574       +4     
- Partials       319      330      +11     

Flag	Coverage Δ
bitbuckettests	9.89% <0.00%> (-0.01%)	⬇️
confidentialtooltests	53.58% <25.00%> (-0.22%)	⬇️
confidentialworkflowtests	28.43% <25.00%> (-0.05%)	⬇️
nonconfidentialtests	32.77% <0.00%> (-0.14%)	⬇️
singularitytests	16.69% <0.00%> (-0.01%)	⬇️
unittests	8.06% <100.00%> (+0.01%)	⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
...ava/io/dockstore/client/cli/YamlVerifyUtility.java	92.30% <100.00%> (-2.36%)	⬇️
...in/java/io/github/collaboratory/wdl/WDLClient.java	79.20% <0.00%> (-1.00%)	⬇️
...ain/java/io/dockstore/common/FileProvisioning.java	70.24% <0.00%> (-0.93%)	⬇️
...ckstore/client/cli/nested/AbstractEntryClient.java	73.50% <0.00%> (-0.50%)	⬇️
...io/dockstore/client/cli/nested/WorkflowClient.java	74.04% <0.00%> (-0.31%)	⬇️
.../src/main/java/io/dockstore/client/cli/Client.java	48.14% <0.00%> (-0.25%)	⬇️
...in/java/io/github/collaboratory/cwl/CWLClient.java	80.28% <0.00%> (-0.18%)	⬇️

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[denis-yuen]

adding @svonworl , think some of the changes are due to dockstore/dockstore#5212