coverage; simplify parametrize config #221
Workflow file for this run
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name: 'Tests' | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }} | |
cancel-in-progress: true | |
on: # yamllint disable-line rule:truthy | |
push: | |
branches: | |
- '*' | |
pull_request: | |
branches: | |
- '*' | |
permissions: | |
contents: read | |
jobs: | |
style: | |
name: Style | |
runs-on: ubuntu-latest | |
timeout-minutes: 3 | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: '3.11' | |
- uses: pre-commit/action@v3.0.1 | |
bandit: | |
name: Bandit | |
needs: style | |
runs-on: ubuntu-latest | |
steps: | |
- uses: davidslusser/actions_python_bandit@v1.0.0 | |
with: | |
src: "mne" | |
options: "-c pyproject.toml -ll -r" | |
pip_install_command: "pip install bandit[toml]" | |
pytest: | |
name: '${{ matrix.os }} / ${{ matrix.kind }} / ${{ matrix.python }}' | |
needs: style | |
timeout-minutes: 70 | |
continue-on-error: true | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
shell: bash -el {0} | |
env: | |
PYTHON_VERSION: '${{ matrix.python }}' | |
MKL_NUM_THREADS: '1' | |
OPENBLAS_NUM_THREADS: '1' | |
PYTHONUNBUFFERED: '1' | |
MNE_CI_KIND: '${{ matrix.kind }}' | |
CI_OS_NAME: '${{ matrix.os }}' | |
strategy: | |
matrix: | |
include: | |
- os: ubuntu-latest | |
python: '3.11' | |
kind: pip-pre | |
- os: ubuntu-latest | |
python: '3.12' | |
kind: conda | |
# 3.12 needs https://github.com/conda-forge/dipy-feedstock/pull/50 | |
- os: macos-14 # arm64 | |
python: '3.11' | |
kind: mamba | |
- os: macos-latest # intel | |
python: '3.11' | |
kind: mamba | |
- os: windows-latest | |
python: '3.10' | |
kind: mamba | |
- os: ubuntu-latest | |
python: '3.9' | |
kind: minimal | |
- os: ubuntu-20.04 | |
python: '3.9' | |
kind: old | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- run: ./tools/github_actions_env_vars.sh | |
# Xvfb/OpenGL | |
- uses: pyvista/setup-headless-display-action@main | |
with: | |
qt: true | |
pyvista: false | |
# Python (if pip) | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python }} | |
if: startswith(matrix.kind, 'pip') | |
# Python (if conda) | |
- name: Remove numba and dipy | |
run: | # TODO: Remove when numba 0.59 and dipy 1.8 land on conda-forge | |
sed -i '/numba/d' environment.yml | |
sed -i '/dipy/d' environment.yml | |
sed -i 's/- mne$/- mne-base/' environment.yml | |
if: matrix.os == 'ubuntu-latest' && startswith(matrix.kind, 'conda') && matrix.python == '3.12' | |
- uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: ${{ env.CONDA_ENV }} | |
environment-name: mne | |
create-args: >- | |
python=${{ env.PYTHON_VERSION }} | |
mamba | |
fmt!=10.2.0 | |
if: ${{ !startswith(matrix.kind, 'pip') }} | |
# Make sure we have the right Python | |
- run: python -c "import platform; assert platform.machine() == 'arm64', platform.machine()" | |
if: matrix.os == 'macos-14' | |
- run: ./tools/github_actions_dependencies.sh | |
# Minimal commands on Linux (macOS stalls) | |
- run: ./tools/get_minimal_commands.sh | |
if: ${{ startswith(matrix.os, 'ubuntu') }} | |
- run: ./tools/github_actions_infos.sh | |
# Check Qt | |
- run: ./tools/check_qt_import.sh $MNE_QT_BACKEND | |
if: ${{ env.MNE_QT_BACKEND != '' }} | |
- name: Run tests with no testing data | |
run: MNE_SKIP_TESTING_DATASET_TESTS=true pytest -m "not (ultraslowtest or pgtest)" --tb=short --cov=mne --cov-report xml -vv -rfE mne/ | |
if: matrix.kind == 'minimal' | |
- run: ./tools/get_testing_version.sh | |
- uses: actions/cache@v4 | |
with: | |
key: ${{ env.TESTING_VERSION }} | |
path: ~/mne_data | |
- run: ./tools/github_actions_download.sh | |
- run: ./tools/github_actions_test.sh | |
- uses: codecov/codecov-action@v4 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
if: success() |