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chore: update news #1002

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Jul 31, 2024
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chore: update news #1002

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2 changes: 1 addition & 1 deletion DESCRIPTION
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Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@ Depends:
utils (>= 4.1.0),
R (>= 4.1.0),
methods,
GiottoClass (>= 0.3.2)
GiottoClass (>= 0.3.3)
Imports:
BiocParallel,
BiocSingular,
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27 changes: 14 additions & 13 deletions NEWS.md
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@@ -1,30 +1,31 @@
# Giotto 4.1.0 TBD

## Bug fixes
* Fix error in `plotInteractivePolygons()` when providing a spatial plot with a continuous scale [#964](https://github.com/drieslab/Giotto/issues/964) by jweis3
* Fix error in DWLS `find_dampening_constant()` when `S[subset, ]` produces only 1 gene.
* Fix error in `interpolateFeatures()` where feature names with `-` or starting with numbers did not work

## New
* `read10xAffineImage()` for reading 10x affine transformed images
* Several modular importer functions

# Giotto 4.0.9
# Giotto 4.1.0 (2024/07/31)

## Breaking changes
* Deprecated `detectSpatialCorGenes()` removed. Use `detectSpatialCorFeats()` instead
* Deprecated `findInteractionChangedGenes()` removed. Use `findInteractionChangedFeats()` instead
* Deprecated `findCellProximityGenes()` removed. Use `findInteractionChangedFeats()` instead
* `createGiottoXeniumObject()` has been overhauled and parameters have changed.

## Bug fixes
* Fix error in `plotInteractivePolygons()` when providing a spatial plot with a continuous scale [#964](https://github.com/drieslab/Giotto/issues/964) by jweis3
* Fix error in DWLS `find_dampening_constant()` when `S[subset, ]` produces only 1 gene.
* Fix error in `interpolateFeatures()` where feature names with `-` or starting with numbers did not work
* Add catch in `runPCAprojectionBatch()` for when ncp requested exceeds number of feats used
* Make `spatCellCellcom()` respect `verbose` flag [#949](https://github.com/drieslab/Giotto/issues/949) by rbutleriii

## New
* Dataset affine registration via interactive shiny app and automated SIFT detection
* Cell segmentation via Cellpose
* `read10xAffineImage()` for reading 10x affine transformed images
* Several modular importer and convenience functions
* ONTraC implementation

## Enhancements
* `print()` methods for `icfObject` and `combIcfObject`

## Changes
* require GiottoUtils (>= 0.1.9)
* require GiottoUtils (>= 0.1.10)
* require GiottoClass (>= 0.3.3)

# Giotto 4.0.8 (2024/05/22)

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