v4.1.6 #1080
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v4.1.6 #1080
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fix: xenium focus image loading when not in a subdirectory
segmentations
New internals - .varexp() - variance explained per PC - .cumvar() - cumulative variance per PC
- docs - add cell_id subsets - plotting of labels in joined umap
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Bug fixes
doScrubletDetect()seed settingEnhancements
labelTransfer()now hasintegration_method = "harmony"for label transferring with an integration pipeline. See ?labelTransfer and theintegration_methodsection.importXenium()load_transcripts()can now return adata.tablerather than thegiottoPointsrepresentationNew
doMesmerSegmentation()anddoStardistSegmentation()segmentation wrappers.varexp()internal for calculating SVD variance determined with support for partial SVDs.cumvar()internal for calculating cumulative variance explaineddotPlot()from GiottoVisualsChanges