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Chore: documentation #157

Merged
merged 1 commit into from
Jan 10, 2024
Merged

Chore: documentation #157

merged 1 commit into from
Jan 10, 2024

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@jiajic jiajic commented Jan 10, 2024

  • update createSpatialNetwork docs
  • add vignetteBuilder info to image_tools vignette

- update createSpatialNetwork docs
- add vignetteBuilder info to image_tools vignette
@jiajic jiajic merged commit aaeb86c into drieslab:dev Jan 10, 2024
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#' @param maximum_distance distance cuttof for Delaunay neighbors to consider. If "auto", "upper wisker" value of the distance vector between neighbors is used; see the boxplot{graphics} documentation for more details.(default = "auto")
#' @param minimum_k minimum number of neigbhours if maximum_distance != NULL
#' @param options (geometry) String containing extra control options for the underlying Qhull command; see the Qhull documentation (../doc/qhull/html/qdelaun.html) for the available options. (default = 'Pp', do not report precision problems)
#' @param maximum_distance distance cuttof for Delaunay neighbors to consider. If "auto", "upper whisker" value of the distance vector between neighbors is used; see the boxplot{graphics} documentation for more details.(default = "auto")

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#' @param options (geometry) String containing extra control options for the underlying Qhull command; see the Qhull documentation (../doc/qhull/html/qdelaun.html) for the available options. (default = 'Pp', do not report precision problems)
#' @param maximum_distance distance cuttof for Delaunay neighbors to consider. If "auto", "upper whisker" value of the distance vector between neighbors is used; see the boxplot{graphics} documentation for more details.(default = "auto")
#' @param minimum_k minimum number of neighbours if maximum_distance != NULL
#' @param options (geometry) String containing extra control options for the underlying Qhull command; see the [Qhull documentation](http://www.qhull.org/html/qdelaun.htm) for the available options. (default = 'Pp', do not report precision problems)

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#' @name createSpatialNetwork
#' @description Create a spatial network based on cell centroid physical distances.
#' @description Create a spatial network based on cell centroids. These networks
#' are often used when determining cell-cell connectivities and spatial relationships.

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