Remove invalid test from branch #1935
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: LORIS Test Suite | |
| on: | |
| - push | |
| - pull_request | |
| jobs: | |
| buildjs: | |
| env: | |
| EEG_VIS_ENABLED: 'true' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install EEG package dependencies | |
| # We only need to install protobuf-compiler | |
| # Other deps were added to fix an apt dependency issue introduced by a new github Ubuntu image | |
| # (see https://github.com/actions/runner-images/blob/releases/ubuntu22/20230305/images/linux/Ubuntu2204-Readme.md) | |
| # that updated the list of installed apt packages/apt repositories. That issue may disappear in future Ubuntu images. | |
| run: | | |
| sudo apt install -y imagemagick-6-common libmagickcore-6.q16-6 libmagickwand-6.q16-6 \ | |
| libprotobuf-dev libprotobuf23 libprotoc23 protobuf-compiler | |
| cd modules/electrophysiology_browser/jsx/react-series-data-viewer/ | |
| protoc protocol-buffers/chunk.proto --js_out=import_style=commonjs,binary:./src/ | |
| - name: Install npm modules | |
| run: npm ci | |
| - name: Compile LORIS javascript | |
| run: npm run compile | |
| - name: Create LORIS JS tarball | |
| run: tar cfvz lorisjs.tar.gz htdocs/js/components/ modules/*/js/* | |
| - name: Create node_modules tarball | |
| run: tar cfvz node_modules.tar.gz node_modules | |
| - uses: actions/upload-artifact@v3 | |
| name: Upload node_modules artifact | |
| with: | |
| name: node_modules | |
| path: node_modules.tar.gz | |
| - uses: actions/upload-artifact@v3 | |
| name: Upload lorisjs.tar.gz artifact | |
| with: | |
| name: lorisjs | |
| path: lorisjs.tar.gz | |
| buildphp: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| php: ['8.3'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup PHP | |
| uses: shivammathur/setup-php@v2 | |
| with: | |
| php-version: ${{ matrix.php }} | |
| extensions: zip, php-ast | |
| - name: Validate composer.json and composer.lock | |
| run: composer validate | |
| - name: Cache Composer packages | |
| id: composer-cache | |
| run: echo "::set-output name=dir::$(composer config cache-files-dir)" | |
| - name: Composer cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ steps.composer-cache.outputs.dir }} | |
| key: ${{ runner.os }}-composer-${{ hashFiles('composer.lock') }} | |
| restore-keys: ${{ runner.os }}-composer- | |
| - name: Install composer dependencies | |
| if: steps.composer-cache.outputs.cache-hit != 'true' | |
| run: composer install --prefer-dist --no-progress --no-suggest | |
| - name: Create vendor tarball | |
| run: tar cfvz vendor-php${{matrix.php}}.tar.gz vendor | |
| - uses: actions/upload-artifact@v3 | |
| name: Upload vendor-php${{matrix.php}}.tar.gz artifact | |
| with: | |
| name: vendor-php${{matrix.php}} | |
| path: vendor-php${{matrix.php}}.tar.gz | |
| api: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - buildjs | |
| - buildphp | |
| env: | |
| DB_DATABASE: LorisTest | |
| DB_USER: SQLTestUser | |
| DB_PASSWORD: TestPassword | |
| LORIS_DB_CONFIG: project/config.xml | |
| DOCKER_WEB_SERVER: http://localhost:8000/ | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| php: ['8.3'] | |
| apiversion: ['v0.0.3', 'v0.0.4-dev'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/download-artifact@v3 | |
| name: Download node_modules artifact | |
| with: | |
| name: node_modules | |
| path: . | |
| - uses: actions/download-artifact@v3 | |
| name: Download compiled LORIS javascript artifact | |
| with: | |
| name: lorisjs | |
| path: . | |
| - uses: actions/download-artifact@v3 | |
| name: Download PHP dependencies artifact | |
| with: | |
| name: vendor-php${{matrix.php}} | |
| path: . | |
| - name: Extract node_modules | |
| run: tar xfvz node_modules.tar.gz | |
| - name: Extract compiled JS | |
| run: tar xfvz lorisjs.tar.gz | |
| - name: Extract composer vendor directory | |
| run: tar xfvz vendor-php${{matrix.php}}.tar.gz | |
| - name: Generate VERSION file | |
| run: make VERSION | |
| - name: Setup project/ directory | |
| run: | | |
| mkdir -p project/instruments | |
| cp test/config.xml project/config.xml | |
| cp test/test_instrument/NDB_BVL_Instrument_testtest.class.inc project/instruments/ | |
| cp -r raisinbread/instruments/* project/instruments/ | |
| sed -i 's/<sandbox>1<\/sandbox>/<sandbox>0<\/sandbox>/g' project/config.xml | |
| sed -i 's/<adminUser>SQLTestUser<\/adminUser>/<adminUser>root<\/adminUser>/g' project/config.xml | |
| sed -i 's/<adminPassword>TestPassword<\/adminPassword>/<adminPassword>root<\/adminPassword>/g' project/config.xml | |
| sed -i 's/<host>db<\/host>/<host>localhost<\/host>/g' project/config.xml | |
| cat project/config.xml | |
| - name: Set up MySQL | |
| run: | | |
| sudo /etc/init.d/mysql start | |
| mysql -e 'CREATE DATABASE ${{ env.DB_DATABASE }};' -uroot -proot | |
| mysql -e "CREATE USER '${{env.DB_USER}}'@'localhost' IDENTIFIED BY '${{env.DB_PASSWORD}}'" -uroot -proot | |
| mysql -e "GRANT UPDATE,INSERT,SELECT,DELETE,CREATE TEMPORARY TABLES ON ${{env.DB_DATABASE}}.* TO '${{env.DB_USER}}'@'localhost'" -uroot -proot | |
| - name: Source default schema and Raisinbread | |
| run: | | |
| mysql ${{ env.DB_DATABASE}} -uroot -proot < SQL/0000-00-00-schema.sql | |
| mysql ${{ env.DB_DATABASE}} -uroot -proot < SQL/0000-00-01-Modules.sql | |
| mysql ${{ env.DB_DATABASE}} -uroot -proot < SQL/0000-00-02-Permission.sql | |
| mysql ${{ env.DB_DATABASE}} -uroot -proot < SQL/0000-00-03-ConfigTables.sql | |
| mysql ${{ env.DB_DATABASE}} -uroot -proot < SQL/0000-00-04-Help.sql | |
| mysql ${{ env.DB_DATABASE}} -uroot -proot < SQL/0000-00-05-ElectrophysiologyTables.sql | |
| find raisinbread/instruments/instrument_sql -name *.sql -not -name 9999-99-99-drop_instrument_tables.sql -exec sh -c "echo Sourcing {}; mysql ${{ env.DB_DATABASE}} -uroot -proot < {}" \; | |
| find raisinbread/RB_files/ -name *.sql -exec sh -c "echo Sourcing {}; mysql ${{ env.DB_DATABASE}} -uroot -proot < {}" \; | |
| - name: Source instrument schemas | |
| run: | | |
| find raisinbread/instruments/instrument_sql -name 0000-*.sql -exec sh -c "echo Sourcing {}; mysql ${{ env.DB_DATABASE}} -uroot -proot < {}" \; | |
| echo Sourcing test/test_instrument/testtest.sql | |
| mysql ${{ env.DB_DATABASE}} -uroot -proot < test/test_instrument/testtest.sql | |
| - name: Set LORIS base path | |
| run: | | |
| echo UPDATE Config SET VALUE=\'`pwd`/\' WHERE ConfigID IN \(SELECT ID FROM ConfigSettings WHERE Name=\'base\'\) | |
| echo UPDATE Config SET VALUE=\'`pwd`/\' WHERE ConfigID IN \(SELECT ID FROM ConfigSettings WHERE Name=\'base\'\) | mysql ${{env.DB_DATABASE}} -uroot -proot | |
| - name: Setup PHP | |
| uses: shivammathur/setup-php@v2 | |
| with: | |
| php-version: ${{ matrix.php }} | |
| extensions: zip, php-ast | |
| - name: Start PHP Web Server | |
| run: php -S localhost:8000 -t htdocs/ htdocs/router.php 2>error_log & | |
| - name: Test server | |
| run: | | |
| sleep 1 | |
| curl -v http://localhost:8000 | |
| - name: Run Test Suite | |
| run: | | |
| vendor/bin/phpunit --configuration test/phpunit.xml --testsuite LorisAPITests --group api-${{ matrix.apiversion }} | |
| - name: Print Error Logs | |
| if: always() | |
| run: cat error_log | |
| docker: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| testsuite: ['integration'] | |
| php: ['8.3'] | |
| ci_node_index: [0,1,2,3] | |
| include: | |
| # add a variable but do not display it in the job's name | |
| - ci_node_total: 4 | |
| - testsuite: 'static' | |
| php: '8.3' | |
| - testsuite: 'unit' | |
| php: '8.3' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup PHP | |
| uses: shivammathur/setup-php@v2 | |
| with: | |
| php-version: ${{ matrix.php }} | |
| extensions: zip, php-ast | |
| - name: Validate composer.json and composer.lock | |
| run: composer validate | |
| - name: Cache Composer packages | |
| id: composer-cache | |
| run: echo "::set-output name=dir::$(composer config cache-files-dir)" | |
| - name: Composer cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ steps.composer-cache.outputs.dir }} | |
| key: ${{ runner.os }}-composer-${{ hashFiles('composer.lock') }} | |
| restore-keys: ${{ runner.os }}-composer- | |
| - name: Change PHP Version in Dockerfile | |
| run: sed -i "s/8.0/${{ matrix.php }}/g" Dockerfile.test.php8 | |
| - name: Install package dependencies | |
| # We only need to install protobuf-compiler | |
| # Other deps were added to fix an apt dependency issue introduced by a new github Ubuntu image | |
| # (see https://github.com/actions/runner-images/blob/releases/ubuntu22/20230305/images/linux/Ubuntu2204-Readme.md) | |
| # that updated the list of installed apt packages/apt repositories. That issue may disappear in future Ubuntu images. | |
| run: | | |
| sudo apt install -y imagemagick-6-common libmagickcore-6.q16-6 libmagickwand-6.q16-6 \ | |
| libprotobuf-dev libprotobuf23 libprotoc23 protobuf-compiler | |
| cd modules/electrophysiology_browser/jsx/react-series-data-viewer/ | |
| protoc protocol-buffers/chunk.proto --js_out=import_style=commonjs,binary:./src/ | |
| - name: Install composer dependencies | |
| if: steps.composer-cache.outputs.cache-hit != 'true' | |
| run: composer install --prefer-dist --no-progress --no-suggest | |
| - name: Build LORIS | |
| run: make dev | |
| - name: Run Test Suite | |
| run: | | |
| # set sandbox to 1 before running the tests | |
| # since some tests only run in sandbox environments | |
| sed -i 's/<sandbox>0<\/sandbox>/<sandbox>1<\/sandbox>/g' test/config.xml | |
| npm run tests:${{ matrix.testsuite }} | |
| env: | |
| # Specifies how many jobs you would like to run in parallel, | |
| CI_NODE_TOTAL: ${{ matrix.ci_node_total }} | |
| # Use the index from matrix as an environment variable | |
| CI_NODE_INDEX: ${{ matrix.ci_node_index }} |