Update setup

setup.py

@@ -2,13 +2,87 @@
 #from version import get_git_version
 
 setup(name='dsa110-nsfrb',
-      #version=get_git_version(),
-      version="0.1.0",
+      version=get_git_version(),
+      #version="0.1.0",
       url='http://github.com/dsa110/dsa110-nsfrb',
       python_requires='>3.8',
+#      requirements=['seaborn', 'astropy', 'hdbscan', 'progress'],
+#      packages=['nsfrb'],
       packages=['nsfrb'],
       zip_safe=False)
 
 #get local nsfrb directory
 import os
 os.system("pwd > metadata.txt")
+
+#make logfile directory outside of git repo
+os.system("mkdir ../dsa110-nsfrb-logfiles")
+logfiles = ["error_log.txt",
+            "inject_error_log.txt",
+            "pipe_log.txt",
+            "run_log.txt",
+            "search_log.txt",
+            "process_log.txt",
+            "candcutter_log.txt",
+            "candcuttertask_log.txt",
+            "candcutter_error_log.txt",
+            "inject_log.txt",
+            "time_log.txt"]
+for i in range(len(logfiles))[:-1]:
+    l = logfiles[i]
+    os.system("touch ../dsa110-nsfrb-logfiles/" + l)
+    os.system("> ../dsa110-nsfrb-logfiles/" + l)
+
+
+"""
+#create file to store trials for candcutter
+os.system("touch ../dsa110-nsfrb-candidates/DMtrials.npy")
+os.system("touch ../dsa110-nsfrb-candidates/widthtrials.npy")
+os.system("touch ../dsa110-nsfrb-candidates/SNRthresh.npy")
+"""
+#create directory for noise stats if not created already
+os.system("mkdir ../dsa110-nsfrb-noise/")
+"""
+#create candidates directory 
+os.system("mkdir ../dsa110-nsfrb-candidates/")
+os.system("mkdir ../dsa110-nsfrb-candidates/raw_cands/")
+os.system("mkdir ../dsa110-nsfrb-candidates/final_cands/")
+os.system("mkdir ../dsa110-nsfrb-candidates/backup_raw_cands/")
+"""
+#create injections directory
+os.system("mkdir ../dsa110-nsfrb-injections/")
+
+#create directory for stored PSFs
+os.system("mkdir ../dsa110-nsfrb-PSF/")
+
+import csv
+
+with open("../dsa110-nsfrb-injections/injections.csv","w") as csvfile:
+    wr = csv.writer(csvfile,delimiter=',')
+    wr.writerow(['ISOT','DM','WIDTH','SNR'])
+csvfile.close()    
+with open("../dsa110-nsfrb-injections/recoveries.csv","w") as csvfile:
+    wr = csv.writer(csvfile,delimiter=',')
+    wr.writerow(['ISOT','DM','WIDTH','SNR','PREDICT','PROB'])
+csvfile.close()
+
+with open(os.environ['NSFRBDATA'] + "dsa110-nsfrb-candidates/fpr_test.csv","w") as csvfile:
+    csvfile.write("ISOT,SNR")
+    #wr = csv.writer(csvfile,delimiter=',')
+    #wr.writerow(['ISOT','SNR'])
+csvfile.close()
+
+
+
+#create directory to store most recent time frame
+os.system("mkdir ../dsa110-nsfrb-frames/")
+
+"""
+#create directories for fast visibilities if not created already
+os.system("mkdir ../dsa110-nsfrb-fast-visibilities/")
+for s in ["lxd110h03","lxd110h04","lxd110h05","lxd110h06","lxd110h07","lxd110h08","lxd110h10","lxd110h11","lxd110h12","lxd110h14","lxd110h15","lxd110h16","lxd110h18","lxd110h19","lxd110h21","lxd110h22"]:
+    os.system("mkdir ../dsa110-nsfrb-fast-visibilities/" + s)
+"""
+
+#create ddirectories for images
+os.system("mkdir ../dsa110-nsfrb-images/")