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* Update install_met_env.kiowa Commented out items and added text to description * #1817 Added to_north argument at two_to_one() * #1817 Calls two_to_one() with false for the third argument, to_north, if latitude moves north to south * Feature 1819 automation doc warnings (#1836) * Removing "/lib" that should not be there. * #1508 checking stat() methoid returns no error before looking at FILE flag * #1838 Added log message for lat/lon values * #1838 Give warning if the first and lat lat/lon is same * #1838 Support the double data type variable on reading float type values * Feature 1833 develop discussions (#1849) * Per #1833, changed references to met_help to Discussions. * Per #1833, fixed typo and removed an unnecessary word * #1852 Removed unused nc_buf_size. Make cur and dim to the same size (called API handles 2D or 3D) * #1852 Check the start and count before calling NetCDF API * Feature 1746 wavelet stat (#1851) * For issue #1746 modified code to allow users to pass in an empty list (or NA) for forecast and observation thresholds in order to skip applying the threhsolds, but it will still compute stats with the raw fields. SL * For issue #1746, added new unit test that uses a config file that has empty lists for the forecast and observation thresholds. SL * For issue #1746 Added some content related to allowing users to set forecast and observation cat thresholds to an empty list in order to skip the binary masking (and consider all grid-points for stats). SL * Per #1746, cleaning up for consistent indentation. * Per #1746, cleaning up for consistent indentation. * Per #1746, add a revision history note, update the plotting range in the postscript output to be [-n,n] where n is the maximum value of the maximum absolute difference and 1.0, and also fix a bug. When the NA threshold comes AFTER a real threshold, the resulting data and difference values were not being updated. * Per #1746, change the Wavelet-Stat config file values in the the wvlt_plot dictionary by setting plot_min = plot_max = 0.0. That enables the default logic of the tool to take effect. Choose the plotting range of the wavelet plots as [-n,n], where n is the maximum of 1.0 and the maximum absolute difference. * Per #1746, used apply_fcst_thresh where it should have been apply_obs_thresh. * Per issue #1746, modified some content related to users being able to skip applying the categorical threhsolds by putting an empty list or NA in the configuration file. SL * Per issue #1746 Added some warnings if the forecast threshold is set to NA but the observation threshold is not NA (a numeric threshold) and vice versa. SL * Per #1746, fix a couple of typos and tweak wording in the wavelet-stat chapter. * Per #1746, loop over each pair of fcst/obs thresholds to check for inconsistent use of the NA threshold type. * Per #1746, a bit of code cleanup replacing calls to n_elements() with n() to make the code more concise. * Per #1746, need to reinitialize apply_fcst_thresh and apply_obs_thresh to true inside the loop since the NA threshold can appear anywhere in the list of thresholds. Co-authored-by: Seth Linden <linden@kiowa.rap.ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu> * Update README.md * #1852 get_string_val: check if 2D variable. Also checking if the variable does not have dimension (#1860) Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> * Feature 1453 create pdf user guide (#1859) * Enable PDF creation * Modify inputenc, fontenc latex_elements * Fix typo in conf.py * Replace unicode with ascii * Replace unicode exponent with math mode * Change eqnarray to align * Replace gif images with png for PDF * Fix png file names * Escape underscore in variable name in math mode * Escape underscore in variable name in math mode * Remove underscores from variables in math mode * Replace bar with overline in some equations * Test derefencing underscores in tables * Test math changes in grid stat * Test math formatting * Test math formatting * Add sphinx.ext.pngmath to conf.py * Fix typo in conf.py * Add sphinx.ext.mathjax to conf.py * Add sphinx.ext.imgmath to conf.py * Fix typo in conf.py * Change math formatting in Appendix C * Temporarily disable equations with errors in Appendix C * Remove sphinx.ext.imgmath in conf.py * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Add sphinx.ext.imgmath to conf.py * Modify math formatting in Appendix C * Temporarily disable equations with errors in Appendix C * Remove sphinx.ext.imgmath in conf.py * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Temporarily disable equations with errors * Modify math formatting in Appendix C * Add usepackage{amssymb} to conf.py * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Modify math formatting in Appendix C * Fix warnings in wavelet-stat.rst * Omit Indices and tables in PDF version of User Guide * Modify math formatting in Appendix G * Modify math formatting in Appendix E * Modify math formatting in Appendix G * Modify math formatting in Appendix G * Modify math formatting in Appendix G * Modify math formatting in Appendix G * Modify math formatting in Appendix G * Modify math formatting in Appendix G * Modify math formatting in Appendix G * Modify math formatting in Appendix G * Modify math formatting in Appendix G * Change release date in conf.py Co-authored-by: John Halley Gotway <johnhg@ucar.edu> * Feature 1853 rps doc (#1861) * Per #1853, adding RPS docs from Eric. * Per #1853, work in progress getting the formatting correct. * Per #1853, work in progress getting the formatting correct. * Per #1853, work in progress getting the formatting correct. * Per #1853, work in progress getting the formatting correct. * Per #1853, adding a manual page break after the ROC image to get it to stay in the right spot. * Per #1853, backing out last change which didn't make the ROC image stay in the right spot. * Add definition for the compilation environment on seneca. * Feature 1843 scatter index (#1863) * Added scatter index variables: SI, SI_BCL, SI_BCU to cnt columns. SL * Per issue #1843 Added Scatter Index variables (SI, SI_BCL, SI_BCU) to the CNT stat type. SL * Added Scatter Index (SI, SI_BCL, SI_BCU) to cnt stat type header. SL * Per issue #1843, added Scatter Index variables to write_cnt_cols(). SL * Per issue #1843 added Scatter Index (si) to CNTinfo class. SL * Per issue #1843 added Scatter Index (SI, si) to CNTInfo::get_stat(). SL * Per issue #1843 added Scatter Index (SI, si) calculation to both versions of compute_cntinfo(). SL * Per issue #1843, forgot semi-colon after SI calculation, fixed. SL * Added Scatter Index (si) to some of the clear() and allocate() functions. SL * Per issue #1843, added Scatter Index (si) to compute_cnt_mean(). SL * Per issue #1843, added Scatter Index (si) to bootstrap interval calculation and to the CNT write function. SL * Per issue #1843 added Scatter Index (SI, SI_BCL, SI_BCU) to store_stat_cnt(). SL * Per issue #1843, in get_stat() moved Scatterd Index (SI) line to be below RMSE for consitency. SL * Added Scatter Index (SI) to the CNT output format table. SL * Added Scatter Index (SI) to CNT statistics definitions. SL * Update appendixC.rst * Update stat_columns.cc * Update compute_ci.cc * Update met_stats.cc * Per #1843, update write_cntinfo() function. Since we're READING the SI value immediately after the RMSE value when computing CI's, we also need to write SI immediately after RMSE. Otherwise, we'll be computing CI's using the wrong statistics replicates. * Per #1843, check for divide by zero when computing SI... this could happen if comparing the same input file to itself with Grid-Stat. * Per #1843, correct definition of SI from RMSE/ME to RMSE/OBAR. * Per #1843, updated the SI definition to divide by OBAR instead of ME, but forgot to update the divide-by-zero check. Co-authored-by: Seth Linden <linden@kiowa.rap.ucar.edu> Co-authored-by: johnhg <johnhg@ucar.edu> Co-authored-by: jprestop <jpresto@ucar.edu> Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> Co-authored-by: hsoh-u <hsoh@ucar.edu> Co-authored-by: Seth Linden <linden@ucar.edu> Co-authored-by: Seth Linden <linden@kiowa.rap.ucar.edu> Co-authored-by: Keith Searight <keith.searight@noaa.gov> Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu>
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