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* 2673 Moved dvariable declaration after include * #2673 Move down namespace below include * Feature #2395 wdir (#2820) * Per #2395, add new columns to VL1L2, VAL1L2, and VCNT line types for wind direction statistics. Work still in progress. * Per #2395, write the new VCNT columns to the output and document the additions to the VL1L2, VAL1L2, and VCNT columns. * Per #2395, add the definition of new statistics to Appendix G. * Per #2395, update file version history. * Per #2395, tweak warning message about zero wind vectors and update grid-stat and point-stat to log calls to the do_vl1l2() function. * Per #2395, refine the weights for wind direction stats, ignoring the undefined directions. * Update src/tools/core/stat_analysis/aggr_stat_line.cc * Update src/tools/core/stat_analysis/parse_stat_line.cc * Update src/tools/core/stat_analysis/aggr_stat_line.cc * Recent changes to branch protection rules for the develop branch have broken the logic of the update_truth.yml GHA workflow. Instead of submitting a PR to merge develop into develop-ref directly, use an intermediate update_truth_for_develop branch. * Feature #2280 ens_prob (#2823) * Per #2280, update to support probability threshold strings like ==8, where 8 is the number of ensemble members, to create probability bins centered on the n/8 for n = 0 ... 8. * Per #2280, update docs about probability threshold settings. * Per #2280, use a loose tolerance when checking for consistent bin widths. * Per #2280, add a new unit test for grid_stat to demonstrate processing the output from gen_ens_prod. * Per #2280, when verifying NMEP probability forecasts, smooth the obs data first. * Per #2280, only request STAT output for the PCT line type to match unit_grid_stat.xml and minimize the new output files. * Per #2280, update config option docs. * Per #2280, update config option docs. * #2673 Change 0 to nullptr * #2673 Change 0 to nullptr * #2673 Change 0 to nullptr * #2673 Change 0 to nullptr * #2673 Change 0 to nullptr * #2673 Removed the redundant parentheses with return * #2673 Removed the redundant parentheses with return * #2673 Removed the redundant parentheses with return * #2673 Removed the redundant parentheses with return * #2673 Removed the redundant parentheses with return * #2673 restored return statement * #2673 Added std namespace * #2673 Moved down 'using namespace' statement. Removed trailing spaces * #2673 Moved down 'using namespace' statement. * #2673 Moved down 'using namespace' statement. * #2673 Moved down 'using namespace' statement. * #2673 Moved down 'using namespace' statement. * #2673 Added std namespace * #2673 Added std namespace * #2673 Added std namespace * #2673 Changed literal 1 to boolean value, true * Feature #2673 enum_to_string (#2835) * Feature #2583 ecnt (#2825) * Unrelated to #2583, fix typo in code comments. * Per #2583, add hooks write 3 new ECNT columns for observation error data. * Per #2583, make error messages about mis-matched array lengths more informative. * Per #2583, switch to more concise variable naming conventions of ign_oerr_cnv, ign_oerr_cor, and dawid_seb. * Per #2583, fix typo to enable compilation * Per #2583, define the 5 new ECNT column names. * Per #2583, add 5 new columns to the ECNT table in the Ensemble-Stat chapter * Per #2583, update stat_columns.cc to write these 5 new ECNT columns * Per #2583, update ECNTInfo class to compute the 5 new ECNT statistics. * Per #2583, update stat-analysis to parse the 5 new ECNT columns. * Per #2583, update aggregate_stat logic for 5 new ECNT columns. * Per #2583, update PairDataEnsemble logic for 5 new ECNT columns * Per #2583, update vx_statistics library with obs_error handling logic for the 5 new ECNT columns * Per #2583, changes to make it compile * Per #2583, changes to make it compile * Per #2583, switch to a consistent ECNT column naming convention with OERR at the end. Using IGN_CONV_OERR and IGN_CORR_OERR. * Per #2583, define ObsErrorEntry::variance() with a call to the dist_var() utility function. * Per #2583, update PairDataEnsemble::compute_pair_vals() to compute the 5 new stats with the correct inputs. * Per #2583, add DEBUG(10) log messages about computing these new stats. * Per #2583, update Stat-Analysis to compute these 5 new stats from the ORANK line type. * Per #2583, whitespace and comments. * Per #2583, update the User's Guide. * Per #2583, remove the DS_ADD_OERR and DS_MULT_OERR ECNT columns and rename DS_OERR as DSS, since observation error is not actually involved in its computation. * Per #2583, minor update to Appendix C * Per #2583, rename ECNT line type statistic DSS to IDSS. * Per #2583, fix a couple of typos * Per #2583, more error checking. * Per #2583, remove the ECNT IDSS column since its just 2*pi*IGN, the existing ignorance score, and only provides meaningful information when combined with the other Dawid-Sebastiani statistics that have already been removed. * Per #2583, add Eric's documentation of these new stats to Appendix C. Along the way, update the DOI links in the references based on this APA style guide: https://apastyle.apa.org/style-grammar-guidelines/references/dois-urls#:~:text=Include%20a%20DOI%20for%20all,URL%2C%20include%20only%20the%20DOI. * Per #2583, fix new equations with embedded underscores for PDF by defining both html and pdf formatting options. * Per #2583, update the ign_conv_oerr equation to include a 2 *pi multiplier for consistency with the existing ignorance score. Also, fix the documented equations. * Per #2583, remove log file that was inadvertently added on this branch. * Per #2583, simplify ObsErrorEntry::variance() implementation. For the distribution type of NONE, return a variance of 0.0 rather than bad data, as discussed with @michelleharrold and @JeffBeck-NOAA on 3/8/2024. --------- Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu> * Revert #2825 since more documentation and testing is needed (#2837) This reverts commit 108a895. * Feature #2583 ecnt fix IGN_OERR_CORR (#2838) * Unrelated to #2583, fix typo in code comments. * Per #2583, add hooks write 3 new ECNT columns for observation error data. * Per #2583, make error messages about mis-matched array lengths more informative. * Per #2583, switch to more concise variable naming conventions of ign_oerr_cnv, ign_oerr_cor, and dawid_seb. * Per #2583, fix typo to enable compilation * Per #2583, define the 5 new ECNT column names. * Per #2583, add 5 new columns to the ECNT table in the Ensemble-Stat chapter * Per #2583, update stat_columns.cc to write these 5 new ECNT columns * Per #2583, update ECNTInfo class to compute the 5 new ECNT statistics. * Per #2583, update stat-analysis to parse the 5 new ECNT columns. * Per #2583, update aggregate_stat logic for 5 new ECNT columns. * Per #2583, update PairDataEnsemble logic for 5 new ECNT columns * Per #2583, update vx_statistics library with obs_error handling logic for the 5 new ECNT columns * Per #2583, changes to make it compile * Per #2583, changes to make it compile * Per #2583, switch to a consistent ECNT column naming convention with OERR at the end. Using IGN_CONV_OERR and IGN_CORR_OERR. * Per #2583, define ObsErrorEntry::variance() with a call to the dist_var() utility function. * Per #2583, update PairDataEnsemble::compute_pair_vals() to compute the 5 new stats with the correct inputs. * Per #2583, add DEBUG(10) log messages about computing these new stats. * Per #2583, update Stat-Analysis to compute these 5 new stats from the ORANK line type. * Per #2583, whitespace and comments. * Per #2583, update the User's Guide. * Per #2583, remove the DS_ADD_OERR and DS_MULT_OERR ECNT columns and rename DS_OERR as DSS, since observation error is not actually involved in its computation. * Per #2583, minor update to Appendix C * Per #2583, rename ECNT line type statistic DSS to IDSS. * Per #2583, fix a couple of typos * Per #2583, more error checking. * Per #2583, remove the ECNT IDSS column since its just 2*pi*IGN, the existing ignorance score, and only provides meaningful information when combined with the other Dawid-Sebastiani statistics that have already been removed. * Per #2583, add Eric's documentation of these new stats to Appendix C. Along the way, update the DOI links in the references based on this APA style guide: https://apastyle.apa.org/style-grammar-guidelines/references/dois-urls#:~:text=Include%20a%20DOI%20for%20all,URL%2C%20include%20only%20the%20DOI. * Per #2583, fix new equations with embedded underscores for PDF by defining both html and pdf formatting options. * Per #2583, update the ign_conv_oerr equation to include a 2 *pi multiplier for consistency with the existing ignorance score. Also, fix the documented equations. * Per #2583, remove log file that was inadvertently added on this branch. * Per #2583, simplify ObsErrorEntry::variance() implementation. For the distribution type of NONE, return a variance of 0.0 rather than bad data, as discussed with @michelleharrold and @JeffBeck-NOAA on 3/8/2024. * Per #2583, updates to ensemble-stat.rst recommended by @michelleharrold and @JeffBeck-NOAA. * Per #2583, implement changes to the IGN_CORR_OERR corrected as directed by @ericgilleland. --------- Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu> * Update the pull request template to include a question about expected impacts to existing METplus Use Cases. * #2830 Changed enum Builtin to enum class * #2830 Converted enum to enum class at config_constants.h * Feature #2830 bootstrap enum (#2843) * Bugfix #2833 develop azimuth (#2840) * Per #2833, fix n-1 bug when defining the azimuth delta for range/azimuth grids. * Per #2833, when definng TcrmwData:range_max_km, divide by n_range - 1 since the range values start at 0. * Per #2833, remove max_range_km from the TC-RMW config file. Set the default rmw_scale to NA so that its not used by default. And update the documentation. Still actually need to make the logic of the code work as it should. * Per #2833, update tc_rmw to define the range as either a function of rmw or using explicit spacing in km. * Per #2833, update the TCRMW Config files to remove the max_range_km entry, and update the unit test for one call to use RMW ranges and the other to use ranges defined in kilometers. * Per #2833, just correct code comments. * Per #2833, divide by n - 1 when computing the range delta, rather than n. * Per #2833, correct the handling of the maximum range in the tc-rmw tool. For fixed delta km, need to define the max range when setting up the grid at the beginning. --------- Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu> * #2830 Changed enum PadSize to enum class * #2830 Removed redundant parantheses * #2830 Removed commenyted out code * #2830 Use auto * #2830 Changed enum to enum class for DistType, InterpMthd, GridTemplates, and NormalizeType * #2830 Moved enum_class_as_integer from header file to cc files * #2830 Added enum_as_int.hpp * #2830 Added enum_as_int.hpp * Deleted enum_class_as_integer and renamed it to enum_class_as_int * Removed redundant paranthese * #2830 Changed enum to enumclass * #2830 Changed enum_class_as_integer to enum_class_as_int * Feature #2379 sonarqube gha (#2847) * Per #2379, testing initial GHA SonarQube setup. * Per #2379, switch to only analyzing the src directory. * Per #2379, move more config logic from sonar-project.properties into the workflow. #ci-skip-all * Per #2379, try removing + symbols * Per #2379, move projectKey into xml workflow and remove sonar-project.properties. * Per #2379, try following the instructions at https://github.com/sonarsource-cfamily-examples/linux-autotools-gh-actions-sq/blob/main/.github/workflows/build.yml ci-skip-all * Per #2379, see details of progress described in this issue comment: #2379 (comment) * Unrelated to #2379, just removing spurious space that gets flagged as a diff when re-running enum_to_string on seneca. * Per #2379, try running SonarQube through GitHub. * Per #2379, remove empty env section and also disable the testing workflow temporarily during sonarqube development. * Per #2379, fix docker image name. * Per #2379, delete unneeded script. * Per #2379, update GHA to scan Python code and push to the correct SonarQube projects. * Per #2379, update GHA SonarQube project names * Per #2379, update the build job name * Per #2379, update the comile step name * Per #2379, switch to consistent SONAR variable names. * Per #2379, fix type in sed expressions. * Per #2379, just rename the log artifact * Per #2379, use time_command wrapper instead of run_command. * Per #2379, fix bad env var name * Per #2379, switch from egrep to grep. * Per #2379, just try cat-ting the logfile * Per #2379, test whether cat-ting the log file actually works. * Per #2379, revert back * Per #2379, mention SonarQube in the PR template. Make workflow name more succinct. * Per #2379, add SONAR_REFERENCE_BRANCH setting to define the sonar.newCode.referenceBranch property. The goal is to define the comparison reference branch for each SonarQube scan. * Per #2379, have the sonarqube.yml job print the reference branch it's using * Per #2379, intentionally introduce a new code smell to see if SonarQube correctly flag it as appearing in new code. * Per #2379, trying adding the SonarQube quality gate check. * Per #2379, add logic for using the report-task.txt output files to check the quality gate status for both the python and cxx scans. * Per #2379 must use unique GHA id's * Per #2379, working on syntax for quality gate checks * Per #2379, try again. * Per #2379, try again * Per #2379, try again * Per #2379, try again * Per #2379, try again * Per #2379, try again * Per #2379, try yet again * Per #2379 * Per #2379, add more debug * Per #2379, remove -it option from docker run commands * Per #2379, again * Per #2379, now that the scan works as expected, remove the intentional SonarQube code smell as well as debug logging. * Hotfix related to #2379. The sonar.newCode.referenceBranch and sonar.branch.name cannot be set to the same string! Only add the newCode definition when they differ. * #2830 Changed enum STATJobType to enum class * #2830 Changed STATLineType to enum class * #2830 Changed Action to enum class * #2830 Changed ModeDataType to enum class * #2830 Changed StepCase to enum class * #2830 Changed enum to enum class * #2830 Changed GenesisPairCategory to enum class * #2830 Removed rediundabt parenrthese * #2830 Reduced same if checking * #2830 Cleanup * #2830 USe empty() instead of lebgth checking * #2830 Adjusted indentations * Feature #2379 develop sonarqube updates (#2850) * Per #2379, move rgb2ctable.py into the python utility scripts directory for better organization and to enable convenient SonarQube scanning. * Per #2379, remove point.py from the vx_python3_utils directory which cleary was inadvertenlty added during development 4 years ago. As far as I can tell it isn't being called by any other code and doesn't belong in the repository. Note that scripts/python/met/point.py has the same name but is entirely different. * Per #2379, update the GHA SonarQube scan to do a single one with Python and C++ combined. The nightly build script is still doing 2 separate scans for now. If this all works well, they could also be combined into a single one. * Per #2379, eliminate MET_CONFIG_OPTIONS from the SonarQube workflow since it doesn't need to be and probably shouldn't be configurable. * Per #2379, trying to copy report-task.txt out of the image * Per #2379, update build_met_sonarqube.sh to check the scan return status * Per #2379, fix bash assignment syntax * Per #2379, remove unused SCRIPT_DIR envvar * Per #2379, switch to a single SonarQube scan for MET's nightly build as well * Feature 2654 ascii2nc polar buoy support (#2846) * Added iabp data type, and modified file_handler to filter based on time range, which was added as a command line option * handle time using input year, hour, min, and doy * cleanup and switch to position day of year for time computations * Added an ascii2nc unit test for iabp data * Added utility scripts to pull iabp data from the web and find files in a time range * Modified iabp_handler to always output a placeholder 'location' observation with value 1 * added description of IABP data python utility scripts * Fixed syntax error * Fixed Another syntax error. * Slight reformat of documentation * Per #2654, update the Makefiles in scripts/python/utility to include all the python scripts that should be installed. * Per #2654, remove unused code from get_iabp_from_web.py that is getting flagged as a bug by SonarQube. * Per #2654, fix typo in docs --------- Co-authored-by: John Halley Gotway <johnhg@ucar.edu> Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu> --------- Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu> Co-authored-by: Howard Soh <hsoh@ucar.edu> Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu> Co-authored-by: davidalbo <dave@ucar.edu> Co-authored-by: metplus-bot <97135045+metplus-bot@users.noreply.github.com>
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