dtcenter · JohnHalleyGotway · Sep 17, 2021 · Jun 14, 2021 · Jun 17, 2021 · Jun 17, 2021
diff --git a/met/data/config/EnsembleStatConfig_default b/met/data/config/EnsembleStatConfig_default
@@ -114,7 +114,8 @@ message_type   = [ "ADPUPA" ];
 sid_inc        = [];
 sid_exc        = [];
 obs_thresh     = [ NA ];
-obs_quality    = [];
+obs_quality_inc  = [];
+obs_quality_exc  = [];
 duplicate_flag = NONE;
 obs_summary    = NONE;
 obs_perc_value = 50;

diff --git a/met/data/config/PointStatConfig_default b/met/data/config/PointStatConfig_default
@@ -97,7 +97,8 @@ obs = fcst;
 message_type   = [ "ADPUPA" ];
 sid_inc        = [];
 sid_exc        = [];
-obs_quality    = [];
+obs_quality_inc  = [];
+obs_quality_exc  = [];
 duplicate_flag = NONE;
 obs_summary    = NONE;
 obs_perc_value = 50;

diff --git a/met/docs/Users_Guide/config_options.rst b/met/docs/Users_Guide/config_options.rst
@@ -1997,20 +1997,37 @@ Percentile value to use when obs_summary = PERC
   obs_perc_value = 50;
 
 
-.. _obs_quality:
+.. _obs_quality_inc:
 
-:ref:`obs_quality <obs_quality>`
+:ref:`obs_quality_inc <obs_quality_inc>`
 
-The "obs_quality" entry specifies the quality flag values that are to be
+The "obs_quality_inc" entry specifies the quality flag values that are to be
 retained and used for verification. An empty list signifies that all
 point observations should be used, regardless of their quality flag value.
 The quality flag values will vary depending on the original source of the
 observations. The quality flag values to retain should be specified as
 an array of strings, even if the values themselves are numeric.
+Note "obs_quality_inc" replaces the older option "obs_quality".
 
 .. code-block:: none
 
-  obs_quality = [ "1", "2", "3", "9" ];
+  obs_quality_inc = [ "1", "2", "3", "9" ];
+
+
+.. _obs_quality_exc:
+
+:ref:`obs_quality_exc <obs_quality_exc>`
+
+The "obs_quality_exc" entry specifies the quality flag values that are to be
+ignored and not used for verification. An empty list signifies that all
+point observations should be used, regardless of their quality flag value.
+The quality flag values will vary depending on the original source of the
+observations. The quality flag values to ignore should be specified as
+an array of strings, even if the values themselves are numeric.
+
+.. code-block:: none
+
+  obs_quality_exc = [ "1", "2", "3", "9" ];
 
 
 .. _met_data_dir:

diff --git a/met/docs/Users_Guide/ensemble-stat.rst b/met/docs/Users_Guide/ensemble-stat.rst
@@ -149,7 +149,8 @@ ____________________
   sid_inc        = [];
   sid_exc        = [];
   duplicate_flag = NONE;
-  obs_quality    = [];
+  obs_quality_inc  = [];
+  obs_quality_exc  = [];
   obs_summary    = NONE;
   obs_perc_value = 50;
   message_type_group_map = [...];

diff --git a/met/docs/Users_Guide/installation.rst b/met/docs/Users_Guide/installation.rst
@@ -248,35 +248,49 @@ NOTE: Several compilation warnings may occur which are expected. If any errors o
 
 The configure script has command line options to specify where to install MET and which MET utilities to install. Include any of the following options that apply to your system:
 
-**-\\-prefix=PREFIX**
+.. code-block:: none
+
+  --prefix=PREFIX
 
 By default, MET will install all the files in "*/usr/local/bin*". You can specify an installation prefix other than "*/usr/local*" using "--prefix", for instance "--prefix=$HOME" or "--prefix=`pwd`".
 
-**-\\-enable-grib2**
+.. code-block:: none
+
+  --enable-grib2
 
 Enable compilation of utilities using GRIB2. Requires $MET_GRIB2C.
 
-**-\\-enable-python**
+.. code-block:: none
+
+  --enable-python
 
 Enable compilation of python interface. Requires $MET_PYTHON_CC and $MET_PYTHON_LD.
 
-**-\\-enable-lidar2nc**
+.. code-block:: none
 
+  --enable-lidar2nc
+
 Enable compilation of utilities using the LIDAR2NC tool.
 
-**-\\-enable-modis**
+.. code-block:: none
+
+  --enable-modis
 
 Enable compilation of the Modis-Regrid tool. Requires $MET_HDF, $MET_HDFEOSINC, and $MET_HDFEOSLIB.
 
-**-\\-enable-mode_graphics**
+.. code-block:: none
+
+  --enable-mode_graphics
 
 Enable compilation of the MODE-Graphics tool. Requires $MET_CAIRO and $MET_FREETYPE.
 
-**-\\-disable-block4**
+.. code-block:: none
+
+  --disable-block4
 
 Disable use of BLOCK4 in the compilation. Use this if you have trouble using PrepBUFR files.
 
-Run the configure script with the **--help** argument to see the full list of configuration options.
+Run the configure script with the **-help** argument to see the full list of configuration options.
 
 Make Targets
 ~~~~~~~~~~~~

diff --git a/met/docs/Users_Guide/point-stat.rst b/met/docs/Users_Guide/point-stat.rst
@@ -342,7 +342,8 @@ ________________________
   sid_inc        = [];
   sid_exc        = [];
   duplicate_flag = NONE;
-  obs_quality    = [];
+  obs_quality_inc  = [];
+  obs_quality_exc  = [];
   obs_summary    = NONE;
   obs_perc_value = 50;
   message_type_group_map = [...];

diff --git a/met/docs/Users_Guide/release-notes.rst b/met/docs/Users_Guide/release-notes.rst
@@ -5,12 +5,49 @@ When applicable, release notes are followed by the GitHub issue number which
 describes the bugfix, enhancement, or new feature:
 `MET GitHub issues. <https://github.com/dtcenter/MET/issues>`_
 
-MET Version 10.1.0-beta1 release notes (|release_date|)
+MET Version 10.1.0-beta2 release notes (|release_date|)
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+* New output:
+
+   * **Enhance MET to compute the CBS Index** (`#1031 <https://github.com/dtcenter/MET/issues/1031>`_).
+   * **Enhance Stat-Analysis to write the GO Index and CBS Index into a new SSIDX STAT line type** (`#1788 <https://github.com/dtcenter/MET/issues/1788>`_).
+   * **Add Scatter Index to the CNT line type** (`#1843 <https://github.com/dtcenter/MET/issues/1843>`_).
+   * **Add ORANK line type to the HiRA output from Point-Stat** (`#1764 <https://github.com/dtcenter/MET/issues/1764>`_).
+   * **Add G and G-Beta to the DMAP line type from Grid-Stat** (`#1673 <https://github.com/dtcenter/MET/issues/1673>`_).
+
+* Configuration:
+
+   * **Make the specification of a binary threshold in Wavelet-Stat optional** (`#1746 <https://github.com/dtcenter/MET/issues/1746>`_).
+   * **Enable TC-Pairs to only write output for a configurable list of valid times** (`#1870 <https://github.com/dtcenter/MET/issues/1870>`_).
+   * Fix broken URLs in default MET config files (`#1864 <https://github.com/dtcenter/MET/issues/1864>`_).
+
+* Bugfixes:
+
+   * **Fix the findings from SonarQube** (`#1855 <https://github.com/dtcenter/MET/issues/1855>`_).
+   * Fix integer overflow in Grid-Diag (`#1886 <https://github.com/dtcenter/MET/issues/1886>`_).
+   * Fix Gen-Vx-Mask so that the -input_field and -mask_field options are processed independently (`#1891 <https://github.com/dtcenter/MET/issues/1891>`_).
+   * Enable Point2Grid to support double type latitude/longitude variables (`#1838 <https://github.com/dtcenter/MET/issues/1838>`_).
+   * Fix the output of Point2Grid which is flipped and rotated with lat/lon to lat/lon conversion (`#1817 <https://github.com/dtcenter/MET/issues/1817>`_).
+   * Fix failure of Ensemble-Stat when verifying against gridded ECMWF GRIB1 files (`#1879 <https://github.com/dtcenter/MET/issues/1879>`_).
+   * Fix consumption of too much memory by Stat-Analysis (`#1875 <https://github.com/dtcenter/MET/issues/1875>`_).
+   * Add check for the start offset and data count are valid before calling NetCDF API (`#1852 <https://github.com/dtcenter/MET/issues/1852>`_).
+   * Fix failure in plot_tcmpr.R script when a directory is passed in with -lookin (`#1872 <https://github.com/dtcenter/MET/issues/1872>`_).
+
+* Documentation:
+
+   * **Create and publish a PDF of the MET User's Guide** (`#1453 <https://github.com/dtcenter/MET/issues/1453>`_).
+   * Document the statistics from the RPS line type in Appendix C (`#1853 <https://github.com/dtcenter/MET/issues/1853>`_).
+   * Treat warnings from the documentation as errors to facilitate continuous integration with GHA (`#1819 <https://github.com/dtcenter/MET/issues/1819>`_).
+   * Update documentation to reference GitHub Discussions instead of MET Help (`#1833 <https://github.com/dtcenter/MET/issues/1833>`_).
+   * Update FAQ in User's Guide with info from webpage FAQ (`#1834 <https://github.com/dtcenter/MET/issues/1834>`_).
+
+MET Version 10.1.0-beta1 release notes (20210613)
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 * Add the HSS_EC statistic to the MCTS line type and a configurable option for its computation (`#1749 <http://github.com/dtcenter/MET/issues/1749>`_).
 * Implement a common API for reading and writing the common NetCDF point observation file format (`#1402 <http://github.com/dtcenter/MET/issues/1402>`_ and `#1581 <http://github.com/dtcenter/MET/issues/1581>`_).
-* Change -type for gen_vx_mask from an optional argument to a required one (`#1792 <http://github.com/dtcenter/MET/issues/1792>`_).
+* Change -type for Gen-Vx-Mask from an optional argument to a required one (`#1792 <http://github.com/dtcenter/MET/issues/1792>`_).
 * Fix python embedding when using a named grid with MET_PYTHON_EXE set (`#1798 <http://github.com/dtcenter/MET/issues/1798>`_).
 * Fix Fortify High finding for src/libcode/vx_data2d_nccf/nccf_file.cc (`#1795 <http://github.com/dtcenter/MET/issues/1795>`_).
 * Modify plot_tcmpr.R script to support plotting of extra-tropical cyclone tracks not verified against BEST tracks (`#1801 <http://github.com/dtcenter/MET/issues/1801>`_).
@@ -31,7 +68,7 @@ MET Version 10.0.0 release notes (20210510)
    * Run the nightly build as the shared met_test user (`#1116 <http://github.com/dtcenter/MET/issues/1116>`_).
    * Correct the time offset for tests in unit_plot_data_plane.xml (`#1677 <http://github.com/dtcenter/MET/issues/1677>`_).
    * Enhance the sample plotting R-script to read output from different versions of MET (`#1653 <http://github.com/dtcenter/MET/issues/1653>`_).
-   * Update the default configuration options to compile the development code with the debug (-g) option and the production code without it (`#1788 <http://github.com/dtcenter/MET/issues/1788>`_).
+   * Update the default configuration options to compile the development code with the debug (-g) option and the production code without it (`#1778 <http://github.com/dtcenter/MET/issues/1778>`_).
    * Update MET to compile using GCC version 10 (`#1552 <https://github.com/dtcenter/MET/issues/1552>`_).
    * Update MET to compile using PGI version 20 (`#1317 <https://github.com/dtcenter/MET/issues/1317>`_).
 
@@ -122,7 +159,7 @@ MET Version 10.0.0 release notes (20210510)
       * **Support additional NetCDF point observation data sources** (`#1345 <http://github.com/dtcenter/MET/issues/1345>`_, `#1509 <http://github.com/dtcenter/MET/issues/1509>`_, and `#1511 <http://github.com/dtcenter/MET/issues/1511>`_).
       * Support the 2-dimensional time variable in Himawari data files (`#1580 <http://github.com/dtcenter/MET/issues/1580>`_).
       * Create empty output files for zero input observations instead of erroring out (`#1630 <http://github.com/dtcenter/MET/issues/1630>`_).
-      * Improve the point2grid runtime performance (`#1421 <http://github.com/dtcenter/MET/issues/1421>`_).
+      * Improve the Point2Grid runtime performance (`#1421 <http://github.com/dtcenter/MET/issues/1421>`_).
       * Process point observations by variable name instead of GRIB code (`#1408 <http://github.com/dtcenter/MET/issues/1408>`_).
 
    * GIS Tools:

diff --git a/met/docs/requirements.txt b/met/docs/requirements.txt
@@ -1,11 +1,3 @@
-sphinx==2.4.4
-sphinx-gallery==0.7.0
-sphinx-rtd-theme==0.4.3
-sphinxcontrib-applehelp==1.0.2
+sphinx-gallery
 sphinxcontrib-bibtex
-sphinxcontrib-devhelp==1.0.2
-sphinxcontrib-htmlhelp==1.0.3
-sphinxcontrib-jsmath==1.0.1
-sphinxcontrib-qthelp==1.0.3
-sphinxcontrib-serializinghtml==1.1.4
-sphinx-panels==0.6.0
+sphinx-panels
diff --git a/met/docs/version b/met/docs/version
@@ -1 +1 @@
-10.0.0-beta4
+10.1.0-beta2
diff --git a/met/scripts/config/EnsembleStatConfig b/met/scripts/config/EnsembleStatConfig
@@ -136,7 +136,8 @@ obs = fcst;
 sid_inc        = [];
 sid_exc        = [];
 obs_thresh     = [ NA ];
-obs_quality    = [];
+obs_quality_inc  = [];
+obs_quality_exc  = [];
 duplicate_flag = NONE;
 obs_summary    = NONE;
 obs_perc_value = 50;

diff --git a/met/scripts/config/PointStatConfig b/met/scripts/config/PointStatConfig
@@ -77,7 +77,8 @@ obs = fcst;
 //
 sid_inc        = [];
 sid_exc        = [];
-obs_quality    = [];
+obs_quality_inc  = [];
+obs_quality_exc  = [];
 duplicate_flag = NONE;
 obs_summary    = NONE;
 obs_percentile = 50;

diff --git a/met/src/basic/enum_to_string/Makefile.am b/met/src/basic/enum_to_string/Makefile.am
@@ -16,7 +16,7 @@ enum_to_string_SOURCES = enum_parser.yy \
               code.cc code.h \
               scope.cc scope.h \
               my_enum_scanner.cc  \
-              enum_to_string.cc
+              enum_to_string.cc enum_to_string.h
 enum_to_string_CPPFLAGS = -DCOPYRIGHT_DIR="\"${abs_top_srcdir}/data\"" ${MET_CPPFLAGS}
 enum_to_string_LDFLAGS = ${MET_LDFLAGS}
 enum_to_string_LDADD = -lvx_cal \