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Feature 2640 ioda2nc dimension #2674

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merged 6 commits into from
Sep 5, 2023
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hsoh-u
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@hsoh-u hsoh-u commented Aug 31, 2023

Expected Differences

ioda2nc processes the IODA input with Location dimension instead of nlocs dimension.

  • Do these changes introduce new tools, command line arguments, or configuration file options? [No]

    If yes, please describe:

  • Do these changes modify the structure of existing or add new output data types (e.g. statistic line types or NetCDF variables)? [No]

    If yes, please describe:

Pull Request Testing

  • Describe testing already performed for these changes:

/d1/personal/hsoh/git/pull_request/MET_feature_2640_ioda2nc_dimension/bin/ioda2nc /d1/personal/hsoh/data/IODA_files/avhrr_radiance_location.nc met_avhrr_radiance_location.nc /d1/personal/hsoh/git/pull_request/MET_feature_2640_ioda2nc_dimension/share/met/config/IODA2NCConfig -v 3 -obs_var brightness_temperature

  • Recommend testing for the reviewer(s) to perform, including the location of input datasets, and any additional instructions:

If you have IODAS V3 data file (with nlocs dimension), make a IODA file with Location dimension.

ncdump IODAV3_filename > IODAV3_filename.dump
sed -i -e "s|nlocs|Location|g" IODAV3_filename.dump
ncgen -o IODAV3_filename.Location.nc IODAV3_filename.dump
  • Do these changes include sufficient documentation updates, ensuring that no errors or warnings exist in the build of the documentation? [Yes]

  • Do these changes include sufficient testing updates? [No]

  • Will this PR result in changes to the test suite? [no]

    If yes, describe the new output and/or changes to the existing output:

  • Please complete this pull request review by [Fill in date].

Pull Request Checklist

See the METplus Workflow for details.

  • Review the source issue metadata (required labels, projects, and milestone).
  • Complete the PR definition above.
  • Ensure the PR title matches the feature or bugfix branch name.
  • Define the PR metadata, as permissions allow.
    Select: Reviewer(s) and Development issue
    Select: Milestone as the version that will include these changes
    Select: Coordinated METplus-X.Y Support project for bugfix releases or MET-X.Y.Z Development project for official releases
  • After submitting the PR, select the ⚙️ icon in the Development section of the right hand sidebar. Search for the issue that this PR will close and select it, if it is not already selected.
  • After the PR is approved, merge your changes. If permissions do not allow this, request that the reviewer do the merge.
  • Close the linked issue and delete your feature or bugfix branch from GitHub.

@hsoh-u hsoh-u added this to the MET 12.0.0 milestone Aug 31, 2023
@hsoh-u hsoh-u requested a review from jprestop August 31, 2023 18:47
@JohnHalleyGotway JohnHalleyGotway linked an issue Aug 31, 2023 that may be closed by this pull request
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@jprestop
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jprestop commented Sep 1, 2023

HI @hsoh-u. Can you please confirm that these are expected differences (from the failing test)?

COMPARING ioda2nc/odb_sonde_16019_all.nc
file1: /data/output/met_test_truth/ioda2nc/odb_sonde_16019_all.nc
file2: /data/output/met_test_output/ioda2nc/odb_sonde_16019_all.nc
ERROR: NetCDF headers differ:
6c6
< 	nhdr = 2 ;
---
> 	nhdr = 96 ;
8,9c8,9
< 	nhdr_typ = 1 ;
< 	nhdr_sid = 1 ;
---
> 	nhdr_typ = 23 ;
> 	nhdr_sid = 20 ;

End of script
ERROR: Differences exist in the output
Error: Process completed with exit code 1.

@hsoh-u
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hsoh-u commented Sep 1, 2023

I did not expect differences. I will take a look.

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hsoh-u commented Sep 1, 2023

Ready for review

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I do not have an IODAS V3 data file and am relying on the testing by @hsoh-u. I have reviewed the code changes and have ensured that all tests passed. I approve this request.

@hsoh-u hsoh-u merged commit 1dd0917 into develop Sep 5, 2023
34 checks passed
@hsoh-u hsoh-u deleted the feature_2640_ioda2nc_dimension branch September 5, 2023 16:20
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Update ioda2nc to support version 3 IODA files
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