Feature #2547 Read WRF output files natively

.gitignore

@@ -17,3 +17,5 @@ share
 Makefile
 make.log
 make_install.log
+.idea
+cmake-build-debug

Make-include

@@ -11,9 +11,9 @@ MET_CPPFLAGS = -I${top_builddir}/src/basic/vx_cal \
 	     -I${top_builddir}/src/libcode/vx_data2d_factory \
 	     -I${top_builddir}/src/libcode/vx_data2d_grib \
 	     -I${top_builddir}/src/libcode/vx_data2d_grib2 \
-	     -I${top_builddir}/src/libcode/vx_data2d_nccf \
 	     -I${top_builddir}/src/libcode/vx_data2d_nc_met \
-	     -I${top_builddir}/src/libcode/vx_data2d_nc_pinterp \
+	     -I${top_builddir}/src/libcode/vx_data2d_nc_wrf \
+	     -I${top_builddir}/src/libcode/vx_data2d_nc_cf \
 	     -I${top_builddir}/src/libcode/vx_data2d_python \
 	     -I${top_builddir}/src/libcode/vx_data2d_ugrid \
 	     -I${top_builddir}/src/libcode/vx_python3_utils \
@@ -58,9 +58,9 @@ MET_LDFLAGS = -L${top_builddir}/src/basic/vx_cal \
 	     -L${top_builddir}/src/libcode/vx_data2d_factory \
 	     -L${top_builddir}/src/libcode/vx_data2d_grib \
 	     -L${top_builddir}/src/libcode/vx_data2d_grib2 \
-	     -L${top_builddir}/src/libcode/vx_data2d_nccf \
 	     -L${top_builddir}/src/libcode/vx_data2d_nc_met \
-	     -L${top_builddir}/src/libcode/vx_data2d_nc_pinterp \
+	     -L${top_builddir}/src/libcode/vx_data2d_nc_wrf \
+	     -L${top_builddir}/src/libcode/vx_data2d_nc_cf \
 	     -L${top_builddir}/src/libcode/vx_data2d_python \
 	     -L${top_builddir}/src/libcode/vx_data2d_ugrid \
 	     -L${top_builddir}/src/libcode/vx_python3_utils \

configure

@@ -10133,11 +10133,12 @@ fi
 
 # Create configured files
 
-ac_config_files="$ac_config_files Makefile scripts/Rscripts/Makefile scripts/Rscripts/include/Makefile scripts/python/Makefile scripts/python/examples/Makefile scripts/python/met/Makefile scripts/python/pyembed/Makefile scripts/python/utility/Makefile scripts/python/tc_diag/Makefile scripts/python/tc_diag/atcf_tools/Makefile scripts/python/tc_diag/config/Makefile scripts/python/tc_diag/diag_lib/Makefile scripts/python/tc_diag/tc_diag_driver/Makefile data/Makefile data/climo/Makefile data/climo/seeps/Makefile data/colortables/Makefile data/colortables/NCL_colortables/Makefile data/config/Makefile data/map/Makefile data/map/admin_by_country/Makefile data/poly/Makefile data/poly/HMT_masks/Makefile data/poly/NCEP_masks/Makefile data/ps/Makefile data/table_files/Makefile data/tc_data/Makefile src/Makefile src/basic/Makefile src/basic/enum_to_string/Makefile src/basic/vx_cal/Makefile src/basic/vx_config/Makefile src/basic/vx_log/Makefile src/basic/vx_math/Makefile src/basic/vx_util/Makefile src/basic/vx_util_math/Makefile src/libcode/Makefile src/libcode/vx_afm/Makefile src/libcode/vx_analysis_util/Makefile src/libcode/vx_color/Makefile src/libcode/vx_data2d/Makefile src/libcode/vx_data2d_factory/Makefile src/libcode/vx_data2d_grib/Makefile src/libcode/vx_data2d_grib2/Makefile src/libcode/vx_data2d_nc_met/Makefile src/libcode/vx_data2d_nc_pinterp/Makefile src/libcode/vx_data2d_nccf/Makefile src/libcode/vx_data2d_ugrid/Makefile src/libcode/vx_geodesy/Makefile src/libcode/vx_gis/Makefile src/libcode/vx_gnomon/Makefile src/libcode/vx_grid/Makefile src/libcode/vx_gsl_prob/Makefile src/libcode/vx_nav/Makefile src/libcode/vx_solar/Makefile src/libcode/vx_nc_obs/Makefile src/libcode/vx_nc_util/Makefile src/libcode/vx_pb_util/Makefile src/libcode/vx_plot_util/Makefile src/libcode/vx_ps/Makefile src/libcode/vx_pxm/Makefile src/libcode/vx_render/Makefile src/libcode/vx_shapedata/Makefile src/libcode/vx_stat_out/Makefile src/libcode/vx_statistics/Makefile src/libcode/vx_time_series/Makefile src/libcode/vx_physics/Makefile src/libcode/vx_series_data/Makefile src/libcode/vx_regrid/Makefile src/libcode/vx_tc_util/Makefile src/libcode/vx_summary/Makefile src/libcode/vx_python3_utils/Makefile src/libcode/vx_data2d_python/Makefile src/libcode/vx_bool_calc/Makefile src/libcode/vx_pointdata_python/Makefile src/libcode/vx_seeps/Makefile src/tools/Makefile src/tools/core/Makefile src/tools/core/ensemble_stat/Makefile src/tools/core/grid_stat/Makefile src/tools/core/mode/Makefile src/tools/core/mode_analysis/Makefile src/tools/core/pcp_combine/Makefile src/tools/core/point_stat/Makefile src/tools/core/series_analysis/Makefile src/tools/core/stat_analysis/Makefile src/tools/core/wavelet_stat/Makefile src/tools/other/Makefile src/tools/other/ascii2nc/Makefile src/tools/other/lidar2nc/Makefile src/tools/other/gen_ens_prod/Makefile src/tools/other/gen_vx_mask/Makefile src/tools/other/gis_utils/Makefile src/tools/other/ioda2nc/Makefile src/tools/other/madis2nc/Makefile src/tools/other/mode_graphics/Makefile src/tools/other/modis_regrid/Makefile src/tools/other/pb2nc/Makefile src/tools/other/plot_data_plane/Makefile src/tools/other/plot_point_obs/Makefile src/tools/other/wwmca_tool/Makefile src/tools/other/gsi_tools/Makefile src/tools/other/regrid_data_plane/Makefile src/tools/other/point2grid/Makefile src/tools/other/shift_data_plane/Makefile src/tools/other/mode_time_domain/Makefile src/tools/other/grid_diag/Makefile src/tools/tc_utils/Makefile src/tools/tc_utils/tc_dland/Makefile src/tools/tc_utils/tc_pairs/Makefile src/tools/tc_utils/tc_stat/Makefile src/tools/tc_utils/tc_gen/Makefile src/tools/tc_utils/rmw_analysis/Makefile src/tools/tc_utils/tc_rmw/Makefile src/tools/tc_utils/tc_diag/Makefile"
+ac_config_files="$ac_config_files Makefile scripts/Rscripts/Makefile scripts/Rscripts/include/Makefile scripts/python/Makefile scripts/python/examples/Makefile scripts/python/met/Makefile scripts/python/pyembed/Makefile scripts/python/utility/Makefile scripts/python/tc_diag/Makefile scripts/python/tc_diag/atcf_tools/Makefile scripts/python/tc_diag/config/Makefile scripts/python/tc_diag/diag_lib/Makefile scripts/python/tc_diag/tc_diag_driver/Makefile data/Makefile data/climo/Makefile data/climo/seeps/Makefile data/colortables/Makefile data/colortables/NCL_colortables/Makefile data/config/Makefile data/map/Makefile data/map/admin_by_country/Makefile data/poly/Makefile data/poly/HMT_masks/Makefile data/poly/NCEP_masks/Makefile data/ps/Makefile data/table_files/Makefile data/tc_data/Makefile src/Makefile src/basic/Makefile src/basic/enum_to_string/Makefile src/basic/vx_cal/Makefile src/basic/vx_config/Makefile src/basic/vx_log/Makefile src/basic/vx_math/Makefile src/basic/vx_util/Makefile src/basic/vx_util_math/Makefile src/libcode/Makefile src/libcode/vx_afm/Makefile src/libcode/vx_analysis_util/Makefile src/libcode/vx_color/Makefile src/libcode/vx_data2d/Makefile src/libcode/vx_data2d_factory/Makefile src/libcode/vx_data2d_grib/Makefile src/libcode/vx_data2d_grib2/Makefile src/libcode/vx_data2d_nc_met/Makefile src/libcode/vx_data2d_nc_wrf/Makefile src/libcode/vx_data2d_nc_cf/Makefile src/libcode/vx_data2d_ugrid/Makefile src/libcode/vx_geodesy/Makefile src/libcode/vx_gis/Makefile src/libcode/vx_gnomon/Makefile src/libcode/vx_grid/Makefile src/libcode/vx_gsl_prob/Makefile src/libcode/vx_nav/Makefile src/libcode/vx_solar/Makefile src/libcode/vx_nc_obs/Makefile src/libcode/vx_nc_util/Makefile src/libcode/vx_pb_util/Makefile src/libcode/vx_plot_util/Makefile src/libcode/vx_ps/Makefile src/libcode/vx_pxm/Makefile src/libcode/vx_render/Makefile src/libcode/vx_shapedata/Makefile src/libcode/vx_stat_out/Makefile src/libcode/vx_statistics/Makefile src/libcode/vx_time_series/Makefile src/libcode/vx_physics/Makefile src/libcode/vx_series_data/Makefile src/libcode/vx_regrid/Makefile src/libcode/vx_tc_util/Makefile src/libcode/vx_summary/Makefile src/libcode/vx_python3_utils/Makefile src/libcode/vx_data2d_python/Makefile src/libcode/vx_bool_calc/Makefile src/libcode/vx_pointdata_python/Makefile src/libcode/vx_seeps/Makefile src/tools/Makefile src/tools/core/Makefile src/tools/core/ensemble_stat/Makefile src/tools/core/grid_stat/Makefile src/tools/core/mode/Makefile src/tools/core/mode_analysis/Makefile src/tools/core/pcp_combine/Makefile src/tools/core/point_stat/Makefile src/tools/core/series_analysis/Makefile src/tools/core/stat_analysis/Makefile src/tools/core/wavelet_stat/Makefile src/tools/other/Makefile src/tools/other/ascii2nc/Makefile src/tools/other/lidar2nc/Makefile src/tools/other/gen_ens_prod/Makefile src/tools/other/gen_vx_mask/Makefile src/tools/other/gis_utils/Makefile src/tools/other/ioda2nc/Makefile src/tools/other/madis2nc/Makefile src/tools/other/mode_graphics/Makefile src/tools/other/modis_regrid/Makefile src/tools/other/pb2nc/Makefile src/tools/other/plot_data_plane/Makefile src/tools/other/plot_point_obs/Makefile src/tools/other/wwmca_tool/Makefile src/tools/other/gsi_tools/Makefile src/tools/other/regrid_data_plane/Makefile src/tools/other/point2grid/Makefile src/tools/other/shift_data_plane/Makefile src/tools/other/mode_time_domain/Makefile src/tools/other/grid_diag/Makefile src/tools/tc_utils/Makefile src/tools/tc_utils/tc_dland/Makefile src/tools/tc_utils/tc_pairs/Makefile src/tools/tc_utils/tc_stat/Makefile src/tools/tc_utils/tc_gen/Makefile src/tools/tc_utils/rmw_analysis/Makefile src/tools/tc_utils/tc_rmw/Makefile src/tools/tc_utils/tc_diag/Makefile"
 
 
 if test -n "$MET_DEVELOPMENT"; then
-   ac_config_files="$ac_config_files src/tools/dev_utils/Makefile src/tools/dev_utils/shapefiles/Makefile internal/test_util/Makefile internal/test_util/basic/Makefile internal/test_util/basic/vx_config/Makefile internal/test_util/basic/vx_log/Makefile internal/test_util/basic/vx_util/Makefile internal/test_util/libcode/Makefile internal/test_util/libcode/vx_data2d/Makefile internal/test_util/libcode/vx_data2d_factory/Makefile internal/test_util/libcode/vx_data2d_grib/Makefile internal/test_util/libcode/vx_data2d_nc_met/Makefile internal/test_util/libcode/vx_data2d_nccf/Makefile internal/test_util/libcode/vx_geodesy/Makefile internal/test_util/libcode/vx_grid/Makefile internal/test_util/libcode/vx_plot_util/Makefile internal/test_util/libcode/vx_ps/Makefile internal/test_util/libcode/vx_tc_util/Makefile internal/test_util/libcode/vx_nc_util/Makefile internal/test_util/libcode/vx_python3_utils/Makefile internal/test_util/libcode/vx_physics/Makefile internal/test_util/libcode/vx_series_data/Makefile internal/test_util/libcode/vx_solar/Makefile internal/test_util/tools/Makefile internal/test_util/tools/other/Makefile internal/test_util/tools/other/mode_time_domain/Makefile"
+   ac_config_files="$ac_config_files src/tools/dev_utils/Makefile src/tools/dev_utils/shapefiles/Makefile internal/test_util/Makefile internal/test_util/basic/Makefile internal/test_util/basic/vx_config/Makefile internal/test_util/basic/vx_log/Makefile internal/test_util/basic/vx_util/Makefile internal/test_util/libcode/Makefile internal/test_util/libcode/vx_data2d/Makefile internal/test_util/libcode/vx_data2d_factory/Makefile internal/test_util/libcode/vx_data2d_grib/Makefile internal/test_util/libcode/vx_data2d_nc_met/Makefile internal/test_util/libcode/vx_data2d_nc_cf/Makefile internal/test_util/libcode/vx_geodesy/Makefile internal/test_util/libcode/vx_grid/Makefile internal/test_util/libcode/vx_plot_util/Makefile internal/test_util/libcode/vx_ps/Makefile internal/test_util/libcode/vx_tc_util/Makefile internal/test_util/libcode/vx_nc_util/Makefile internal/test_util/libcode/vx_python3_utils/Makefile internal/test_util/libcode/vx_physics/Makefile internal/test_util/libcode/vx_series_data/Makefile internal/test_util/libcode/vx_solar/Makefile internal/test_util/tools/Makefile internal/test_util/tools/other/Makefile internal/test_util/tools/other/mode_time_domain/Makefile"
+
 
 fi
 
@@ -11065,8 +11066,8 @@ do
     "src/libcode/vx_data2d_grib/Makefile") CONFIG_FILES="$CONFIG_FILES src/libcode/vx_data2d_grib/Makefile" ;;
     "src/libcode/vx_data2d_grib2/Makefile") CONFIG_FILES="$CONFIG_FILES src/libcode/vx_data2d_grib2/Makefile" ;;
     "src/libcode/vx_data2d_nc_met/Makefile") CONFIG_FILES="$CONFIG_FILES src/libcode/vx_data2d_nc_met/Makefile" ;;
-    "src/libcode/vx_data2d_nc_pinterp/Makefile") CONFIG_FILES="$CONFIG_FILES src/libcode/vx_data2d_nc_pinterp/Makefile" ;;
-    "src/libcode/vx_data2d_nccf/Makefile") CONFIG_FILES="$CONFIG_FILES src/libcode/vx_data2d_nccf/Makefile" ;;
+    "src/libcode/vx_data2d_nc_wrf/Makefile") CONFIG_FILES="$CONFIG_FILES src/libcode/vx_data2d_nc_wrf/Makefile" ;;
+    "src/libcode/vx_data2d_nc_cf/Makefile") CONFIG_FILES="$CONFIG_FILES src/libcode/vx_data2d_nc_cf/Makefile" ;;
     "src/libcode/vx_data2d_ugrid/Makefile") CONFIG_FILES="$CONFIG_FILES src/libcode/vx_data2d_ugrid/Makefile" ;;
     "src/libcode/vx_geodesy/Makefile") CONFIG_FILES="$CONFIG_FILES src/libcode/vx_geodesy/Makefile" ;;
     "src/libcode/vx_gis/Makefile") CONFIG_FILES="$CONFIG_FILES src/libcode/vx_gis/Makefile" ;;
@@ -11147,7 +11148,7 @@ do
     "internal/test_util/libcode/vx_data2d_factory/Makefile") CONFIG_FILES="$CONFIG_FILES internal/test_util/libcode/vx_data2d_factory/Makefile" ;;
     "internal/test_util/libcode/vx_data2d_grib/Makefile") CONFIG_FILES="$CONFIG_FILES internal/test_util/libcode/vx_data2d_grib/Makefile" ;;
     "internal/test_util/libcode/vx_data2d_nc_met/Makefile") CONFIG_FILES="$CONFIG_FILES internal/test_util/libcode/vx_data2d_nc_met/Makefile" ;;
-    "internal/test_util/libcode/vx_data2d_nccf/Makefile") CONFIG_FILES="$CONFIG_FILES internal/test_util/libcode/vx_data2d_nccf/Makefile" ;;
+    "internal/test_util/libcode/vx_data2d_nc_cf/Makefile") CONFIG_FILES="$CONFIG_FILES internal/test_util/libcode/vx_data2d_nc_cf/Makefile" ;;
     "internal/test_util/libcode/vx_geodesy/Makefile") CONFIG_FILES="$CONFIG_FILES internal/test_util/libcode/vx_geodesy/Makefile" ;;
     "internal/test_util/libcode/vx_grid/Makefile") CONFIG_FILES="$CONFIG_FILES internal/test_util/libcode/vx_grid/Makefile" ;;
     "internal/test_util/libcode/vx_plot_util/Makefile") CONFIG_FILES="$CONFIG_FILES internal/test_util/libcode/vx_plot_util/Makefile" ;;

configure.ac

@@ -1321,8 +1321,8 @@ AC_CONFIG_FILES([Makefile
                  src/libcode/vx_data2d_grib/Makefile
                  src/libcode/vx_data2d_grib2/Makefile
                  src/libcode/vx_data2d_nc_met/Makefile
-                 src/libcode/vx_data2d_nc_pinterp/Makefile
-                 src/libcode/vx_data2d_nccf/Makefile
+                 src/libcode/vx_data2d_nc_wrf/Makefile
+                 src/libcode/vx_data2d_nc_cf/Makefile
                  src/libcode/vx_data2d_ugrid/Makefile
                  src/libcode/vx_geodesy/Makefile
                  src/libcode/vx_gis/Makefile
@@ -1405,7 +1405,7 @@ if test -n "$MET_DEVELOPMENT"; then
                     internal/test_util/libcode/vx_data2d_factory/Makefile
                     internal/test_util/libcode/vx_data2d_grib/Makefile
                     internal/test_util/libcode/vx_data2d_nc_met/Makefile
-                    internal/test_util/libcode/vx_data2d_nccf/Makefile
+                    internal/test_util/libcode/vx_data2d_nc_cf/Makefile
                     internal/test_util/libcode/vx_geodesy/Makefile
                     internal/test_util/libcode/vx_grid/Makefile
                     internal/test_util/libcode/vx_plot_util/Makefile

data/config/ConfigConstants

@@ -60,11 +60,12 @@ MB_to_PA(p)  = HPA_to_PA(p);
 GRIB1          = 1;
 GRIB2          = 2;
 NETCDF_MET     = 3;
-NETCDF_PINT    = 4;
-NETCDF_NCCF    = 5;
-PYTHON_NUMPY   = 6;
-PYTHON_XARRAY  = 7;
-NETCDF_UGRID   = 8;
+NETCDF_WRF     = 4;
+NETCDF_PINT    = 5;
+NETCDF_NCCF    = 6;
+PYTHON_NUMPY   = 7;
+PYTHON_XARRAY  = 8;
+NETCDF_UGRID   = 9;
 
 // Set Logic
 NONE           = 1;

docs/Users_Guide/appendixA.rst

@@ -1684,7 +1684,7 @@ Q. Why is the grid upside down?
      but the data is packed upside down.
 
      Try using the "file_type" entry. The "file_type" entry specifies the
-     input file type (e.g. GRIB1, GRIB2, NETCDF_MET, NETCDF_PINT, NETCDF_NCCF)
+     input file type (e.g. GRIB1, GRIB2, NETCDF_MET, NETCDF_WRF, NETCDF_PINT, NETCDF_NCCF)
      rather than letting the code determine it itself. For valid file_type
      values, see "File types" in the *data/config/ConfigConstants* file. This
      entry should be defined within the "fcst" or "obs" dictionaries.

docs/Users_Guide/config_options.rst

@@ -950,6 +950,7 @@ to be verified. This dictionary may include the following entries:
        file_type = GRIB1;         GRIB version 1
        file_type = GRIB2;         GRIB version 2
        file_type = NETCDF_MET;    NetCDF created by another MET tool
+       file_type = NETCDF_WRF;    NetCDF WRF output.
        file_type = NETCDF_PINT;   NetCDF created by running the p_interp
                                   or wrf_interp utility on WRF output.
                                   May be used to read unstaggered raw WRF