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Update Develop-ref after #1932 (#1955)
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Co-authored-by: johnhg <johnhg@ucar.edu>
Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
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118 changes: 114 additions & 4 deletions docs/Users_Guide/glossary.rst
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Expand Up @@ -7569,22 +7569,22 @@ METplus Configuration Glossary
| *Used by:* PB2NC
TC_PAIRS_CONSENSUS<n>_NAME
Specify the value for nth 'consensus.name' in the MET configuration file for TCPairs.
Specify the value for the nth 'consensus.name' in the MET configuration file for TCPairs.

| *Used by:* TCPairs
TC_PAIRS_CONSENSUS<n>_MEMBERS
Specify the value for nth 'consensus.members' in the MET configuration file for TCPairs.
Specify the value for the nth 'consensus.members' in the MET configuration file for TCPairs.

| *Used by:* TCPairs
TC_PAIRS_CONSENSUS<n>_REQUIRED
Specify the value for nth 'consensus.required' in the MET configuration file for TCPairs.
Specify the value for the nth 'consensus.required' in the MET configuration file for TCPairs.

| *Used by:* TCPairs
TC_PAIRS_CONSENSUS<n>_MIN_REQ
Specify the value for nth 'consensus.min_req' in the MET configuration file for TCPairs.
Specify the value for the nth 'consensus.min_req' in the MET configuration file for TCPairs.

| *Used by:* TCPairs
Expand Down Expand Up @@ -10093,3 +10093,113 @@ METplus Configuration Glossary
See :term:`STAT_ANALYSIS_FCST_VALID_END`.

| *Used by:* StatAnalysis
TC_PAIRS_DIAG_INFO_MAP<n>_DIAG_SOURCE
Specify the value for the nth 'diag_info_map.diag_source' in the MET configuration file for TCPairs.

| *Used by:* TCPairs
TC_PAIRS_DIAG_INFO_MAP<n>_TRACK_SOURCE
Specify the value for the nth 'diag_info_map.track_source' in the MET configuration file for TCPairs.

| *Used by:* TCPairs
TC_PAIRS_DIAG_INFO_MAP<n>_FIELD_SOURCE
Specify the value for the nth 'diag_info_map.field_source' in the MET configuration file for TCPairs.

| *Used by:* TCPairs
TC_PAIRS_DIAG_INFO_MAP<n>_MATCH_TO_TRACK
Specify the value for the nth 'diag_info_map.match_to_track' in the MET configuration file for TCPairs.

| *Used by:* TCPairs
TC_PAIRS_DIAG_INFO_MAP<n>_DIAG_NAME
Specify the value for the nth 'diag_info_map.diag_name' in the MET configuration file for TCPairs.

| *Used by:* TCPairs
TC_PAIRS_DIAG_CONVERT_MAP<n>_DIAG_SOURCE
Specify the value for the nth 'diag_convert_map.diag_source' in the MET configuration file for TCPairs.

| *Used by:* TCPairs
TC_PAIRS_DIAG_CONVERT_MAP<n>_KEY
Specify the value for the nth 'diag_convert_map.key' in the MET configuration file for TCPairs.

| *Used by:* TCPairs
TC_PAIRS_DIAG_CONVERT_MAP<n>_CONVERT
Specify the value for the nth 'diag_convert_map.convert' in the MET configuration file for TCPairs.

| *Used by:* TCPairs
TC_PAIRS_DIAG_DIR<n>
Specify the (optional) directory for the nth -diag argument for TCPairs.

| *Used by:* TCPairs
TC_PAIRS_DIAG_TEMPLATE<n>
Specify the (optional) template for the nth -diag argument for TCPairs.

| *Used by:* TCPairs
TC_PAIRS_DIAG_SOURCE<n>
Specify the (optional) source string for the nth -diag argument for TCPairs.

| *Used by:* TCPairs
TC_STAT_DIAG_THRESH_NAME
Specify the value for 'diag_thresh_name' in the MET configuration file for TCStat.

| *Used by:* TCStat
TC_STAT_DIAG_THRESH_VAL
Specify the value for 'diag_thresh_val' in the MET configuration file for TCStat.

| *Used by:* TCStat
TC_STAT_INIT_DIAG_THRESH_NAME
Specify the value for 'init_diag_thresh_name' in the MET configuration file for TCStat.

| *Used by:* TCStat
TC_STAT_INIT_DIAG_THRESH_VAL
Specify the value for 'init_diag_thresh_val' in the MET configuration file for TCStat.

| *Used by:* TCStat
TC_STAT_LINE_TYPE
Specify the value for 'line_type' in the MET configuration file for TCStat.

| *Used by:* TCStat
TC_STAT_EVENT_EQUAL
Specify the value for 'event_equal' in the MET configuration file for TCStat.

| *Used by:* TCStat
TC_STAT_EVENT_EQUAL_LEAD
Specify the value for 'event_equal_lead' in the MET configuration file for TCStat.

| *Used by:* TCStat
TC_STAT_OUT_INIT_MASK
Specify the value for 'out_init_mask' in the MET configuration file for TCStat.

| *Used by:* TCStat
TC_STAT_OUT_VALID_MASK
Specify the value for 'out_valid_mask' in the MET configuration file for TCStat.

| *Used by:* TCStat
SERIES_ANALYSIS_MASK_GRID
Specify the value for 'mask.grid' in the MET configuration file for SeriesAnalysis.

| *Used by:* SeriesAnalysis
SERIES_ANALYSIS_MASK_POLY
Specify the value for 'mask.poly' in the MET configuration file for SeriesAnalysis.

| *Used by:* SeriesAnalysis
250 changes: 249 additions & 1 deletion docs/Users_Guide/release-notes.rst
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Expand Up @@ -189,4 +189,252 @@ METplus Version 5.0.0 Beta 1 Release Notes (2022-06-22)
METplus Wrappers Upgrade Instructions
=====================================

Coming Soon!
EnsembleStat/GenEnsProd
-----------------------

Note: If :ref:`ensemble_stat_wrapper` is not found in the :term:`PROCESS_LIST`
for any use cases, then this section is not relevant.

The METplus v5.0.0 coordinated release includes changes that remove ensemble
product generation from EnsembleStat. GenEnsProd is now required to generate
ensemble products. There are 3 situations listed below that require slightly
different modifications.

Case 1: EnsembleStat only generating ensemble products
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

If the use case had been calling EnsembleStat **WITHOUT** the -grid_obs or
-point_obs command line options, we can assume it was only doing ensemble
post-processing.
That call to EnsembleStat should be replaced with a call to GenEnsProd instead.

Rename the following variables:
"""""""""""""""""""""""""""""""

FCST_ENSEMBLE_STAT_INPUT_DIR => GEN_ENS_PROD_INPUT_DIR

FCST_ENSEMBLE_STAT_INPUT_TEMPLATE => GEN_ENS_PROD_INPUT_TEMPLATE

ENSEMBLE_STAT_OUTPUT_DIR => GEN_ENS_PROD_OUTPUT_DIR

ENSEMBLE_STAT_OUTPUT_TEMPLATE => GEN_ENS_PROD_OUTPUT_TEMPLATE
**and add full filename template for NetCDF output file to end of value**, i.e.
/gen_ens_prod_{valid?fmt=%Y%m%d_%H%M%S}V_ens.nc

ENSEMBLE_STAT_N_MEMBERS => GEN_ENS_PROD_N_MEMBERS

ENSEMBLE_STAT_ENS_THRESH => GEN_ENS_PROD_ENS_THRESH

ENSEMBLE_STAT_ENS_VLD_THRESH => GEN_ENS_PROD_VLD_THRESH

ENSEMBLE_STAT_ENSEMBLE_FLAG_LATLON => GEN_ENS_PROD_ENSEMBLE_FLAG_LATLON
ENSEMBLE_STAT_ENSEMBLE_FLAG_MEAN => GEN_ENS_PROD_ENSEMBLE_FLAG_MEAN
ENSEMBLE_STAT_ENSEMBLE_FLAG_STDEV => GEN_ENS_PROD_ENSEMBLE_FLAG_STDEV
ENSEMBLE_STAT_ENSEMBLE_FLAG_MINUS => GEN_ENS_PROD_ENSEMBLE_FLAG_MINUS
ENSEMBLE_STAT_ENSEMBLE_FLAG_PLUS => GEN_ENS_PROD_ENSEMBLE_FLAG_PLUS
ENSEMBLE_STAT_ENSEMBLE_FLAG_MIN => GEN_ENS_PROD_ENSEMBLE_FLAG_MIN
ENSEMBLE_STAT_ENSEMBLE_FLAG_MAX => GEN_ENS_PROD_ENSEMBLE_FLAG_MAX
ENSEMBLE_STAT_ENSEMBLE_FLAG_RANGE => GEN_ENS_PROD_ENSEMBLE_FLAG_RANGE
ENSEMBLE_STAT_ENSEMBLE_FLAG_VLD_COUNT => GEN_ENS_PROD_ENSEMBLE_FLAG_VLD_COUNT
ENSEMBLE_STAT_ENSEMBLE_FLAG_FREQUENCY => GEN_ENS_PROD_ENSEMBLE_FLAG_FREQUENCY
ENSEMBLE_STAT_ENSEMBLE_FLAG_NEP => GEN_ENS_PROD_ENSEMBLE_FLAG_NEP
ENSEMBLE_STAT_ENSEMBLE_FLAG_NMEP => GEN_ENS_PROD_ENSEMBLE_FLAG_NMEP

ENSEMBLE_STAT_REGRID_TO_GRID => GEN_ENS_PROD_REGRID_TO_GRID
ENSEMBLE_STAT_REGRID_METHOD => GEN_ENS_PROD_REGRID_METHOD
ENSEMBLE_STAT_REGRID_WIDTH => GEN_ENS_PROD_REGRID_WIDTH
ENSEMBLE_STAT_REGRID_VLD_THRESH => GEN_ENS_PROD_REGRID_VLD_THRESH
ENSEMBLE_STAT_REGRID_SHAPE => GEN_ENS_PROD_REGRID_SHAPE
ENSEMBLE_STAT_NBRHD_PROB_WIDTH => GEN_ENS_PROD_NBRHD_PROB_WIDTH
ENSEMBLE_STAT_NBRHD_PROB_SHAPE => GEN_ENS_PROD_NBRHD_PROB_SHAPE
ENSEMBLE_STAT_NBRHD_PROB_VLD_THRESH => GEN_ENS_PROD_NBRHD_PROB_VLD_THRESH
ENSEMBLE_STAT_NMEP_SMOOTH_VLD_THRESH => GEN_ENS_PROD_NMEP_SMOOTH_VLD_THRESH
ENSEMBLE_STAT_NMEP_SMOOTH_SHAPE => GEN_ENS_PROD_NMEP_SMOOTH_SHAPE
ENSEMBLE_STAT_NMEP_SMOOTH_METHOD => GEN_ENS_PROD_NMEP_SMOOTH_METHOD
ENSEMBLE_STAT_NMEP_SMOOTH_WIDTH => GEN_ENS_PROD_NMEP_SMOOTH_WIDTH
ENSEMBLE_STAT_NMEP_SMOOTH_GAUSSIAN_DX => GEN_ENS_PROD_NMEP_SMOOTH_GAUSSIAN_DX
ENSEMBLE_STAT_NMEP_SMOOTH_GAUSSIAN_RADIUS => GEN_ENS_PROD_NMEP_SMOOTH_GAUSSIAN_RADIUS

If ENS_VAR<n>_ variables are not set:
"""""""""""""""""""""""""""""""""""""

If no FCST/OBS verification is being performed in the use case using another
wrapper, then rename the FCST_VAR<n> variables to ENS_VAR<n>.

e.g.

FCST_VAR1_NAME => ENS_VAR1_NAME
FCST_VAR1_LEVELS => ENS_VAR1_LEVELS
FCST_VAR2_NAME => ENS_VAR2_NAME
FCST_VAR2_LEVELS => ENS_VAR2_LEVELS
... etc

If FCST/OBS verification is being performed by another tool, then add
ENS_VAR<n> variables using the corresponding FCST_VAR<n> values.

e.g.

ENS_VAR1_NAME = {FCST_VAR1_NAME}
ENS_VAR1_LEVELS = {FCST_VAR1_LEVELS}
ENS_VAR2_NAME = {FCST_VAR2_NAME}
ENS_VAR2_LEVELS = {FCST_VAR2_LEVELS}
... etc

Remove the following variables:
"""""""""""""""""""""""""""""""

Remove any remaining ENSEMBLE_STAT_* variables that are no longer used.
Some examples:
Remove ENSEMBLE_STAT_ENSEMBLE_FLAG_RANK
Remove ENSEMBLE_STAT_ENSEMBLE_FLAG_WEIGHT
Remove ENSEMBLE_STAT_MESSAGE_TYPE
Remove ENSEMBLE_STAT_OUTPUT_FLAG_ECNT
Remove ENSEMBLE_STAT_OUTPUT_FLAG_RPS
Remove ENSEMBLE_STAT_OUTPUT_FLAG_RHIST
Remove ENSEMBLE_STAT_OUTPUT_FLAG_PHIST
Remove ENSEMBLE_STAT_OUTPUT_FLAG_ORANK
Remove ENSEMBLE_STAT_OUTPUT_FLAG_SSVAR
Remove ENSEMBLE_STAT_OUTPUT_FLAG_RELP
Remove ENSEMBLE_STAT_OUTPUT_FLAG_PCT
Remove ENSEMBLE_STAT_OUTPUT_FLAG_PSTD
Remove ENSEMBLE_STAT_OUTPUT_FLAG_PJC
Remove ENSEMBLE_STAT_OUTPUT_FLAG_PRC
Remove ENSEMBLE_STAT_OUTPUT_FLAG_ECLV
Remove ENSEMBLE_STAT_DUPLICATE_FLAG
Remove ENSEMBLE_STAT_SKIP_CONST
Remove ENSEMBLE_STAT_OBS_ERROR_FLAG
Remove ENSEMBLE_STAT_ENS_SSVAR_BIN_SIZE
Remove ENSEMBLE_STAT_ENS_PHIST_BIN_SIZE
Remove ENSEMBLE_STAT_CI_ALPHA
Remove ENSEMBLE_STAT_MASK_GRID
Remove ENSEMBLE_STAT_MASK_POLY
Remove ENSEMBLE_STAT_INTERP_FIELD
Remove ENSEMBLE_STAT_INTERP_VLD_THRESH
Remove ENSEMBLE_STAT_INTERP_SHAPE
Remove ENSEMBLE_STAT_INTERP_METHOD
Remove ENSEMBLE_STAT_INTERP_WIDTH
Remove ENSEMBLE_STAT_OBS_QUALITY_INC/EXC
Remove ENSEMBLE_STAT_GRID_WEIGHT_FLAG



Case 2: EnsembleStat performing ensemble verification but not generating ensemble products
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

No changes should be required for this case to continue to work as expected
except for removing configuration variables that are no longer used.
The use case will no longer generate a _ens.nc file and may create other files
(_orank.nc and txt) that contain requested output.

Rename the following variables:
"""""""""""""""""""""""""""""""

ENSEMBLE_STAT_ENSEMBLE_FLAG_MEAN => ENSEMBLE_STAT_NC_ORANK_FLAG_MEAN
ENSEMBLE_STAT_ENSEMBLE_FLAG_RANK => ENSEMBLE_STAT_NC_ORANK_FLAG_RANK
ENSEMBLE_STAT_ENSEMBLE_FLAG_WEIGHT => ENSEMBLE_STAT_NC_ORANK_FLAG_WEIGHT
ENSEMBLE_STAT_ENSEMBLE_FLAG_VLD_COUNT => ENSEMBLE_STAT_NC_ORANK_FLAG_VLD_COUNT


Remove the following variables:
"""""""""""""""""""""""""""""""

Remove any ENS_VAR<n>_* variables
Remove ENSEMBLE_STAT_ENSEMBLE_FLAG_*
ENSEMBLE_STAT_NBRHD_PROB_WIDTH
ENSEMBLE_STAT_NBRHD_PROB_SHAPE
ENSEMBLE_STAT_NBRHD_PROB_VLD_THRESH
ENSEMBLE_STAT_NMEP_SMOOTH_VLD_THRESH
ENSEMBLE_STAT_NMEP_SMOOTH_SHAPE
ENSEMBLE_STAT_NMEP_SMOOTH_METHOD
ENSEMBLE_STAT_NMEP_SMOOTH_WIDTH
ENSEMBLE_STAT_NMEP_SMOOTH_GAUSSIAN_DX
ENSEMBLE_STAT_NMEP_SMOOTH_GAUSSIAN_RADIUS


Case 3: EnsembleStat generating ensemble products and performing ensemble verification
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

GenEnsProd will need to be added to the PROCESS_LIST in addition to EnsembleStat to generate the ensemble verification output.

PROCESS_LIST = ..., EnsembleStat, GenEnsProd, ...

Set the input dir and template variables for GenEnsProd to match the values set for FCST input to EnsembleStat. Also set the output dir to match EnsembleStat output dir.

GEN_ENS_PROD_INPUT_DIR = {FCST_ENSEMBLE_STAT_INPUT_DIR}
GEN_ENS_PROD_INPUT_TEMPLATE = {FCST_ENSEMBLE_STAT_INPUT_TEMPLATE}
GEN_ENS_PROD_OUTPUT_DIR = {ENSEMBLE_STAT_OUTPUT_DIR}

If the EnsembleStat output template is set, then copy the value and add a template for the NetCDF output filename at the end following a forward slash ‘/’ character.

If ENSEMBLE_STAT_OUTPUT_TEMPLATE = {valid?fmt=%Y%m%d%H}
then set
GEN_ENS_PROD_OUTPUT_TEMPLATE = {valid?fmt=%Y%m%d%H}/gen_ens_prod_{valid?fmt=%Y%m%d_%H%M%S}V_ens.nc
or something similar.

If the EnsembleStat output template is not set, then set GenEnsProd’s template to the desired NetCDF output filename. Here is an example:

GEN_ENS_PROD_OUTPUT_TEMPLATE = gen_ens_prod_{valid?fmt=%Y%m%d_%H%M%S}V_ens.nc

Ensure that any downstream wrappers in the PROCESS_LIST are configured to read the correct GenEnsProd output file instead of the _ens.nc file that was previously generated by EnsembleStat.

If ENS_VAR<n>_ variables are not set, add ENS_VAR<n> variables using the corresponding FCST_ENSEMBLE_STAT_VAR<n> or FCST_VAR<n> values.
If FCST_ENSEMBLE_VAR<n>_* variables are set, then use only those values, otherwise use FCST_VAR<n>_*

e.g.

ENS_VAR1_NAME = {FCST_VAR1_NAME}
ENS_VAR1_LEVELS = {FCST_VAR1_LEVELS}
ENS_VAR2_NAME = {FCST_VAR2_NAME}
ENS_VAR2_LEVELS = {FCST_VAR2_LEVELS}


If any of the following ENSEMBLE_STAT_* variables are set in the configuration file, then rename them to the corresponding GEN_ENS_PROD_* variable:

ENSEMBLE_STAT_NBRHD_PROB_WIDTH => GEN_ENS_PROD_NBRHD_PROB_WIDTH
ENSEMBLE_STAT_NBRHD_PROB_SHAPE => GEN_ENS_PROD_NBRHD_PROB_SHAPE
ENSEMBLE_STAT_NBRHD_PROB_VLD_THRESH => GEN_ENS_PROD_NBRHD_PROB_VLD_THRESH
ENSEMBLE_STAT_NMEP_SMOOTH_VLD_THRESH => GEN_ENS_PROD_NMEP_SMOOTH_VLD_THRESH
ENSEMBLE_STAT_NMEP_SMOOTH_SHAPE => GEN_ENS_PROD_NMEP_SMOOTH_SHAPE
ENSEMBLE_STAT_NMEP_SMOOTH_METHOD => GEN_ENS_PROD_NMEP_SMOOTH_METHOD
ENSEMBLE_STAT_NMEP_SMOOTH_WIDTH => GEN_ENS_PROD_NMEP_SMOOTH_WIDTH
ENSEMBLE_STAT_NMEP_SMOOTH_GAUSSIAN_DX => GEN_ENS_PROD_NMEP_SMOOTH_GAUSSIAN_DX
ENSEMBLE_STAT_NMEP_SMOOTH_GAUSSIAN_RADIUS => GEN_ENS_PROD_NMEP_SMOOTH_GAUSSIAN_RADIUS
FCST_ENSEMBLE_STAT_INPUT_GRID_DATATYPE => GEN_ENS_PROD_INPUT_DATATYPE


If any of the following ENSEMBLE_STAT_* variables are set in the configuration file, then set the corresponding GEN_ENS_PROD_* variables to the same value or reference the ENSEMBLE_STAT_* version.

GEN_ENS_PROD_N_MEMBERS = {ENSEMBLE_STAT_N_MEMBERS}
GEN_ENS_PROD_ENS_THRESH = {ENSEMBLE_STAT_ENS_THRESH}
GEN_ENS_PROD_REGRID_TO_GRID = {ENSEMBLE_STAT_REGRID_TO_GRID}
GEN_ENS_PROD_REGRID_METHOD = {ENSEMBLE_STAT_REGRID_METHOD}
GEN_ENS_PROD_REGRID_WIDTH = {ENSEMBLE_STAT_REGRID_WIDTH}
GEN_ENS_PROD_VLD_THRESH = {ENSEMBLE_STAT_VLD_THRESH}
GEN_ENS_PROD_SHAPE = {ENSEMBLE_STAT_SHAPE}


If any of the following ENSEMBLE_STAT_ENSEMBLE_FLAG_* variables are set in the configuration file, then set the corresponding GEN_ENS_PROD_ENSEMBLE_FLAG_* variables to the same value.

ENSEMBLE_STAT_ENSEMBLE_FLAG_LATLON
ENSEMBLE_STAT_ENSEMBLE_FLAG_MEAN
ENSEMBLE_STAT_ENSEMBLE_FLAG_STDEV
ENSEMBLE_STAT_ENSEMBLE_FLAG_MINUS
ENSEMBLE_STAT_ENSEMBLE_FLAG_PLUS
ENSEMBLE_STAT_ENSEMBLE_FLAG_MIN
ENSEMBLE_STAT_ENSEMBLE_FLAG_MAX
ENSEMBLE_STAT_ENSEMBLE_FLAG_RANGE
ENSEMBLE_STAT_ENSEMBLE_FLAG_VLD_COUNT
ENSEMBLE_STAT_ENSEMBLE_FLAG_FREQUENCY
ENSEMBLE_STAT_ENSEMBLE_FLAG_NEP
ENSEMBLE_STAT_ENSEMBLE_FLAG_NMEP

e.g.

If ENSEMBLE_STAT_ENSEMBLE_FLAG_LATLON = TRUE
Add GEN_ENS_PROD_ENSEMBLE_FLAG_LATLON = TRUE

If any of the following ENSEMBLE_STAT_ENSEMBLE_FLAG_* variables are set in the configuration file, then rename them to the corresponding ENSEMBLE_STAT_NC_ORANK_FLAG_* variables.

ENSEMBLE_STAT_ENSEMBLE_FLAG_LATLON => ENSEMBLE_STAT_NC_ORANK_FLAG_LATLON
ENSEMBLE_STAT_ENSEMBLE_FLAG_MEAN => ENSEMBLE_STAT_NC_ORANK_FLAG_MEAN
ENSEMBLE_STAT_ENSEMBLE_FLAG_VLD_COUNT => ENSEMBLE_STAT_NC_ORANK_FLAG_VLD_COUNT
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