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Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com> Co-authored-by: John Halley Gotway <johnhg@ucar.edu> Co-authored-by: jprestop <jpresto@ucar.edu> Co-authored-by: Tracy Hertneky <hertneky@seneca.rap.ucar.edu> Co-authored-by: Giovanni Rosa <giovanni.rosa@unimol.it> Co-authored-by: j-opatz <59586397+j-opatz@users.noreply.github.com> Co-authored-by: Mrinal Biswas <biswas@seneca.rap.ucar.edu> Co-authored-by: j-opatz <jopatz@ucar.edu> Co-authored-by: Daniel Adriaansen <dadriaan@ucar.edu> Co-authored-by: Jonathan Vigh <jvigh@ucar.edu> Co-authored-by: root <root@localhost> Co-authored-by: Dan Adriaansen <dadriaan@ucar.edu> Co-authored-by: lisagoodrich <33230218+lisagoodrich@users.noreply.github.com> Co-authored-by: Julie Prestopnik <jpresto@ucar.edu> Co-authored-by: Tracy <tracy.hertneky@noaa.gov> Co-authored-by: bikegeek <3753118+bikegeek@users.noreply.github.com> Co-authored-by: metplus-bot <97135045+metplus-bot@users.noreply.github.com> Co-authored-by: Lisa Goodrich <lisag@ucar.edu> Co-authored-by: Tracy Hertneky <39317287+hertneky@users.noreply.github.com> Co-authored-by: Giovanni Rosa <g.rosa1@studenti.unimol.it> Co-authored-by: mrinalbiswas <biswas@ucar.edu> Co-authored-by: Christina Kalb <kalb@ucar.edu> Co-authored-by: jason-english <73247785+jason-english@users.noreply.github.com> Co-authored-by: John Sharples <41682323+John-Sharples@users.noreply.github.com> Co-authored-by: Hank Fisher <fisherh@ucar.edu> Co-authored-by: reza-armuei <144857501+reza-armuei@users.noreply.github.com> Co-authored-by: Mallory Row <mallory.row@noaa.gov> Closes #1986 fix develop Fix broken documentation links (#2004) fix #2026 develop StatAnalysis looping (#2028) fix priority of obs_window config variables so that wrapper-specific version is preferred over generic OBS_WINDOW_BEGIN/END (#2062) fix #2070 var list numeric order (#2072) fix #2087 develop docs_pdf (#2091) fix #2096/#2098 develop - fix skip if output exists and do not error if no commands were run (#2099) Fix for Dockerfile smell DL4000 (#2112) fix #2082 develop regrid.convert/censor_thresh/censor_val (#2140) fix #2082 main_v5.0 regrid.convert/censor_thresh/censor_val (#2101) fix #2137 develop PointStat -obs_valid_beg/end (#2141) fix failured introduced by urllib3 (see urllib3/urllib3#2168) fix #2161 develop PCPCombine additional field arguments in -subtract mode (#2162) fix #2168 develop - StatAnalysis time shift (#2169) fix releases. (#2183) fix #2189 develop - spaces in complex thresholds (#2191) fix #2179 develop TCPairs fix -diag argument (#2187) fixes (#2200) fix diff tests (#2217) fix automated tests (#2237) fix #2235 rename multivar_itensity to multivar_intensity_flag (#2236) fix #2241 Create directory containing -out_stat file (#2242) fix #2245 use unique run ID to name logger instance (#2247) fix #2244 develop fix diff tests (#2254) fixture to set pytest tmpdir (#2261) fix #1853 develop - PointStat don't require mask variables to be set (#2262) fix #2279 develop - buoy station file from 2022 (#2280) fix (#2313) fix ReadTheDocs requirements to include pillow which is a dependency of sphinx-gallery: see https://blog.readthedocs.com/defaulting-latest-build-tools/ for more info on why this was necessary fix bug described in pangeo-data/xESMF#246 fix failing use case tests -- install python packages dateutil and requests via apk instead of pip because the pip commands began failing -- see PEP668 https://peps.python.org/pep-0668/ -- also changed scripts to create conda environments for use case tests to install all packages in a single call to mamba instead of individual calls
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docs/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsOMI_TotalColumnOzone.py
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|---|---|---|
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| """ | ||
| Grid-Stat: Using Python Embedding for Total Column Ozone | ||
| ================================================================================ | ||
| model_applications/medium_range/GridStat_fcstGFS_obsOMI | ||
| _TotalColumnOzone.conf | ||
| """ | ||
| ############################################################################## | ||
| # Scientific Objective | ||
| # -------------------- | ||
| # To provide useful statistical information on the relationship between observation | ||
| # data in gridded format to a gridded forecast. The Ozone Monitoring Instrument (OMI) | ||
| # data covers a 36 hour period and is compared to the average of the gridded forecast | ||
| # files (all from the same initialization time). | ||
|
|
||
| ############################################################################## | ||
| # Datasets | ||
| # -------- | ||
| # | ||
| # | **Forecast:** GFS (1 degree Lat/Lon grid) | ||
| # | **Observation:** NASA's Level-3 Aura/OMI Global Total Ozone Mapping Spectrometer-Like (TOMS-Like) Total Column Ozone gridded product OMTO3e (0.25deg Lat/Lon grid) | ||
| # | **Location:** Click here for the METplus releases page and download sample data for the appropriate release: https://github.com/dtcenter/METplus/releases | ||
| # | This tarball should be unpacked into the directory that you will set the value of INPUT_BASE. See `Running METplus`_ section for more information. | ||
|
|
||
| ############################################################################## | ||
| # METplus Components | ||
| # ------------------ | ||
| # | ||
| # This use case first runs PCPCombine on the forecast data to build a | ||
| # 36-hour Total Colum Ozone mean/average file. Then the forecast data | ||
| # are compared to the observation data using GridStat. This use case utilizes | ||
| # the METplus GridStat wrapper to read in the observation file using Python Embedding. | ||
|
|
||
| ############################################################################## | ||
| # METplus Workflow | ||
| # ---------------- | ||
| # | ||
| # The following tools are used for each run time: | ||
| # | ||
| # PCPCombine (forecast) > GridStat | ||
| # | ||
| # It processes the following run times: | ||
| # | ||
| # | **Valid:** 2023-12-05 06Z (36 hour period covering 2023-12-03 18Z - 2023-12-05 06Z) | ||
| # | **Init:** 2023-12-03 06Z | ||
| # | **Forecast lead:** 48 | ||
|
|
||
| ############################################################################## | ||
| # METplus Configuration | ||
| # --------------------- | ||
| # | ||
| # METplus first loads all of the configuration files found in parm/metplus_config, | ||
| # then it loads any configuration files passed to METplus via the command line | ||
| # parm/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsOMI_TotalColumnOzone.conf | ||
| # | ||
| # .. highlight:: bash | ||
| # .. literalinclude:: ../../../../parm/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsOMI_TotalColumnOzone.conf | ||
|
|
||
| ############################################################################## | ||
| # MET Configuration | ||
| # ----------------- | ||
| # | ||
| # METplus sets environment variables based on user settings in the METplus configuration file. | ||
| # See :ref:`How METplus controls MET config file settings<metplus-control-met>` for more details. | ||
| # | ||
| # **YOU SHOULD NOT SET ANY OF THESE ENVIRONMENT VARIABLES YOURSELF! THEY WILL BE OVERWRITTEN BY METPLUS WHEN IT CALLS THE MET TOOLS!** | ||
| # | ||
| # If there is a setting in the MET configuration file that is currently not supported by METplus you'd like to control, please refer to: | ||
| # :ref:`Overriding Unsupported MET config file settings<met-config-overrides>` | ||
| # | ||
| # .. note:: See the :ref:`GridStat MET Configuration<grid-stat-met-conf>` section of the User's Guide for more information on the environment variables used in the file below: | ||
| # | ||
| # .. highlight:: bash | ||
| # .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped | ||
|
|
||
| ############################################################################## | ||
| # Python Embedding | ||
| # ---------------- | ||
| # | ||
| # This use case uses one Python embedding script with GridStat to read the input observation data | ||
| # | ||
| # parm/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsOMI_TotalColumnOzone/read_omi-aura_l3-omto3e.py | ||
| # | ||
| # .. highlight:: python | ||
| # .. literalinclude:: ../../../../parm/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsOMI_TotalColumnOzone/read_omi-aura_l3-omto3e.py | ||
|
|
||
|
|
||
| ############################################################################## | ||
| # Running METplus | ||
| # --------------- | ||
| # | ||
| # Pass the use case configuration file to the run_metplus.py script | ||
| # along with any user-specific system configuration files if desired:: | ||
| # | ||
| # run_metplus.py /path/to/METplus/parm/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsOMI_TotalColumnOzone.conf /path/to/user_system.conf | ||
| # | ||
| # See :ref:`running-metplus` for more information. | ||
| # | ||
|
|
||
| ############################################################################## | ||
| # Expected Output | ||
| # --------------- | ||
| # | ||
| # A successful run will output the following both to the screen and to the logfile:: | ||
| # | ||
| # INFO: METplus has successfully finished running. | ||
| # | ||
| # Refer to the value set for **OUTPUT_BASE** to find where the output data was generated. | ||
| # Output for this use case will be found in /model_applications/medium_range/GridStat_fcstGFS_obsOMI_TotalColumnOzone | ||
| # (relative to **OUTPUT_BASE**) | ||
| # and will contain the following files: | ||
| # | ||
| # * PCPCombine/pcp_combine.tozone_l0.mean.f048.init2023120306.nc | ||
| # * GridStat/grid_stat_GFS_vs_OMI_480000L_20231205_060000V.stat | ||
|
|
||
| ############################################################################## | ||
| # Keywords | ||
| # -------- | ||
| # | ||
| # .. note:: | ||
| # | ||
| # * PCPCombineToolUseCase | ||
| # * GridStatToolUseCase | ||
| # * MediumRangeAppUseCase | ||
| # * GRIBFileUseCase | ||
| # * PythonEmbeddingFileUseCase | ||
| # * RegriddingInToolUseCase | ||
| # * NOAAEMCOrgUseCase | ||
| # | ||
| # Navigate to the :ref:`quick-search` page to discover other similar use cases. | ||
| # | ||
| # | ||
| # | ||
| # sphinx_gallery_thumbnail_path = '_static/medium_range-GridStat_fcstGFS_obsOMI_TotalColumnOzone.png' | ||
| # |
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