Add from_species TS constructor

[t-young31]

Resolves #211

[codecov]

Codecov Report

Merging #214 (9ff0e9c) into v1.3.4 (af3daee) will decrease coverage by 0.06%.
The diff coverage is 100.00%.

@@            Coverage Diff             @@
##           v1.3.4     #214      +/-   ##
==========================================
- Coverage   97.08%   97.01%   -0.07%     
==========================================
  Files         195      195              
  Lines       20011    19962      -49     
==========================================
- Hits        19428    19367      -61     
- Misses        583      595      +12     

Flag	Coverage Δ
unittests	97.01% <100.00%> (-0.07%)	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
autode/__init__.py	100.00% <100.00%> (ø)
autode/transition_states/base.py	67.61% <100.00%> (+1.13%)	⬆️
autode/transition_states/transition_state.py	64.28% <100.00%> (+1.61%)	⬆️
tests/test_ts/test_ts_template.py	95.79% <100.00%> (-0.16%)	⬇️
tests/test_log.py	92.85% <0.00%> (-7.15%)	⬇️
autode/log/log.py	93.33% <0.00%> (-3.34%)	⬇️
tests/testutils.py	93.93% <0.00%> (-3.04%)	⬇️
tests/test_calculation.py	97.06% <0.00%> (-2.20%)	⬇️
tests/test_input_output.py	98.55% <0.00%> (-1.45%)	⬇️
tests/test_atoms.py	98.35% <0.00%> (-1.24%)	⬇️
... and 6 more

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[t-young31]

Project codecov addressed in #215