Skip to content

dustreturn/teal.modules.clinical

 
 

Repository files navigation

teal.modules.clinical

CRAN Version Total Downloads Last Month Downloads Last Week Downloads

Check 🛠 Docs 📚

GitHub forks GitHub repo stars

GitHub commit activity GitHub contributors GitHub last commit GitHub pull requests GitHub repo size GitHub language count Project Status: Active -- The project has reached a stable, usable state and is being actively developed. Current Version Open Issues

This package contains a set of standard teal modules to be used with CDISC data in order to generate many of the standard outputs used in clinical trials.

These modules include, but are not limited to:

  • Data visualizations:
    • Forest plots (tm_g_forest_rsp()/tm_g_forest_tte())
    • Line plots (tm_g_lineplot())
    • Kaplan-Meier plots (tm_g_km())
    • ...
  • Statistical model fits:
    • MMRM (tm_a_mmrm())
    • Logistic regression (tm_t_logistic())
    • Cox regression (tm_t_coxreg())
    • ...
  • Summary tables:
    • Unique patients (tm_t_summary())
    • Exposure across patients (tm_t_exposure())
    • Change from baseline for parameters (tm_t_summary_by())
    • ...
  • Patient-level profile modules:
    • Table of basic information about chosen patient (tm_t_pp_basic_info())
    • Plot of patient vitals over time (tm_g_pp_vitals())
    • General timeline for individual patients (tm_g_pp_patient_timeline())
    • ...

Most modules in the package are implemented using functions from the R package tern in order to produce their output.

Please see the Teal Gallery and TLG Catalog for examples of shiny apps created using modules from this package.

Installation

# stable versions
install.packages('teal.modules.clinical')

# install.packages("pak")
pak::pak("insightsengineering/teal.modules.clinical@*release")

Alternatively, you might want to use the development version available on r-universe.

# beta versions
install.packages('teal.modules.clinical', repos = c('https://pharmaverse.r-universe.dev', getOption('repos')))

# install.packages("pak")
pak::pak("insightsengineering/teal.modules.clinical")

Usage

To understand how to use this package, please refer to the Package Website.

Getting help

If you encounter a bug or have a feature request, please file an issue. For questions, discussions, and staying up to date, please use the teal channel in the pharmaverse slack workspace.

Acknowledgment

This package is the result of the joint efforts of many developers and stakeholders. We would like to thank everyone who has contributed so far!

Stargazers and Forkers

Stargazers over time

Stargazers over time

Stargazers

Stargazers repo roster for

Forkers

Forkers repo roster for

About

Provides teal modules for the standard clinical trials outputs

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages

  • R 100.0%