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Merge pull request #3207 from branfosj/20240210091944_new_pr_mummer
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replace `run_cmd` with `run_shell_cmd` in custom easyblock for MUMmer (`mummer`)
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bartoldeman authored Feb 29, 2024
2 parents 0f918ef + 60e86a0 commit 670d565
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions easybuild/easyblocks/m/mummer.py
Original file line number Diff line number Diff line change
Expand Up @@ -35,7 +35,7 @@
from easybuild.easyblocks.generic.configuremake import ConfigureMake
from easybuild.easyblocks.perl import get_major_perl_version
from easybuild.tools.filetools import apply_regex_substitutions, copy_file, is_binary, mkdir, read_file
from easybuild.tools.run import run_cmd
from easybuild.tools.run import run_shell_cmd


class EB_MUMmer(ConfigureMake):
Expand All @@ -59,7 +59,7 @@ def configure_step(self):
"""Configure MUMmer build by running make check and setting make options."""

cmd = "%s make check %s" % (self.cfg['preconfigopts'], self.cfg['configopts'])
run_cmd(cmd, log_all=True, simple=True, log_output=True)
run_shell_cmd(cmd)

self.cfg.update('buildopts', 'all')

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